Papers citing EukRef

Number of papers citing EukRef: 95

2025

Mills, D. B., A. Vuillemin, K. Muschler, et al. (2025). “The Rise of Algae promoted eukaryote predation in the Neoproterozoic benthos”. In: Science Advances 11.8. Cited by: 0; All Open Access, Gold Open Access, Green Open Access. DOI: 10.1126/sciadv.adt2147.

Packer, J. A., D. Zavadska, E. J. Weston, et al. (2025). “Characterization of Allobodo yubaba sp. nov. and Novijibodo darinka gen. et sp. nov., cultivable free-living species of the phylogenetically enigmatic kinetoplastid taxon Allobodonidae”. In: Journal of Eukaryotic Microbiology 72.1. Cited by: 0; All Open Access, Hybrid Gold Open Access. DOI: 10.1111/jeu.13072.

Piwosz, K., A. Ameryk, K. Wdówka, et al. (2025). “Vertical distribution of heterotrophic nanoflagellates in the Baltic Proper”. In: Oceanologia 67.1. Cited by: 0. DOI: 10.5697/JMZS3739.

2024

Cho, A., D. V. Tikhonenkov, G. Lax, et al. (2024). “Phylogenomic position of genetically diverse phagotrophic stramenopile flagellates in the sediment-associated MAST-6 lineage and a potentially halotolerant placididean”. In: Molecular Phylogenetics and Evolution 190. Cited by: 7. DOI: 10.1016/j.ympev.2023.107964.

Cristi, A., C. S. Law, M. Pinkerton, et al. (2024). “Environmental driving forces and phytoplankton diversity across the Ross Sea region during a summer–autumn transition”. In: Limnology and Oceanography 69.4. Cited by: 1; All Open Access, Hybrid Gold Open Access, p. 772 – 788. DOI: 10.1002/lno.12526.

Debjit, D., T. Nayak, G. Das, et al. (2024). Metagenomics and bioinformatics in microbial ecology: current status and beyond. Cited by: 1 , p. 359 – 385. DOI: 10.1016/B978-0-323-98394-5.00009-2.

Huang, X., Y. Li, H. Du, et al. (2024). “Comparative assessment of the intragenomic variations of dinoflagellate Tripos species through single-cell sequencing”. In: Marine Pollution Bulletin 206. Cited by: 2. DOI: 10.1016/j.marpolbul.2024.116690.

Kang, Z., Z. Lei, W. Fei, et al. (2024). “Dynamics in eukaryotic algal communities regulate bacterial and fungal communities as biocrusts develop in a temperate desert in Central Asia”. In: Functional Ecology 38.3. Cited by: 2, p. 531 – 545. DOI: 10.1111/1365-2435.14496.

Knoll, L. B., B. Fry, N. M. Hayes, et al. (2024). “Reduced snow and increased nutrients show enhanced ice-associated photoautotrophic growth using a modified experimental under-ice design”. In: Limnology and Oceanography 69.1. Cited by: 5; All Open Access, Hybrid Gold Open Access, p. 203 – 216. DOI: 10.1002/lno.12469.

Krinos, A., R. Bowers, R. Rohwer, et al. (2024). “Time-series metagenomics reveals changing protistan ecology of a temperate dimictic lake”. In: Microbiome 12.1. Cited by: 3; All Open Access, Gold Open Access, Green Open Access. DOI: 10.1186/s40168-024-01831-y.

López-Rodríguez, M. R., C. G. Ribeiro, S. Rodríguez-Marconi, et al. (2024). “Stable dominance of parasitic dinoflagellates in Antarctic sponges”. In: PeerJ 12.11. Cited by: 0; All Open Access, Gold Open Access, Green Open Access. DOI: 10.7717/peerj.18365.

Maggard, I. J., K. B. Deel, T. W. Etoll, et al. (2024). “Freshwater mussels prefer a diet of stramenopiles and fungi over bacteria”. In: Scientific Reports 14.1. Cited by: 3; All Open Access, Gold Open Access, Green Open Access. DOI: 10.1038/s41598-024-62245-2.

Mazurkiewicz, M., J. Pawłowska, I. Barrenechea Angeles, et al. (2024). “Sediment DNA metabarcoding and morphology provide complementary insight into macrofauna and meiobenthos response to environmental gradients in an Arctic glacial fjord”. In: Marine Environmental Research 198. Cited by: 2; All Open Access, Green Open Access, Hybrid Gold Open Access. DOI: 10.1016/j.marenvres.2024.106552.

Renner, S. S., M. D. Scherz, C. L. Schoch, et al. (2024). “Improving the gold standard in NCBI GenBank and related databases: DNA sequences from type specimens and type strains”. In: Systematic Biology 73.2. Cited by: 4; All Open Access, Green Open Access, Hybrid Gold Open Access, p. 486 – 494. DOI: 10.1093/sysbio/syad068.

Wiśniewska, M. M., E. D. Salomaki, J. D. Silberman, et al. (2024). “Expanded gene and taxon sampling of diplomonads shows multiple switches to parasitic and free-living lifestyle”. In: BMC Biology 22.1. Cited by: 1; All Open Access, Gold Open Access. DOI: 10.1186/s12915-024-02013-w.

Wright, L., J. Garbarino, and C. Marizzi (2024). “Engaging Students and Teachers as Community Scientists in DNA Barcoding Initiatives”. In: Methods in Molecular Biology 2744. Cited by: 0, p. 525 – 535. DOI: 10.1007/978-1-0716-3581-0_32.

2023

Baltoumas, F. A., E. Karatzas, D. Paez-Espino, et al. (2023). “Exploring microbial functional biodiversity at the protein family level—From metagenomic sequence reads to annotated protein clusters”. In: Frontiers in Bioinformatics 3. Cited by: 3; All Open Access, Gold Open Access, Green Open Access. DOI: 10.3389/fbinf.2023.1157956.

Belair, M., F. Pensec, J. Jany, et al. (2023). “Profiling Walnut Fungal Pathobiome Associated with Walnut Dieback Using Community-Targeted DNA Metabarcoding”. In: Plants 12.12. Cited by: 8; All Open Access, Gold Open Access, Green Open Access. DOI: 10.3390/plants12122383.

Canino, A., C. Lemonnier, B. Alric, et al. (2023). “Which barcode to decipher freshwater microalgal assemblages? Tests on mock communities”. In: International Journal of Limnology 59. Cited by: 2; All Open Access, Green Open Access, Hybrid Gold Open Access. DOI: 10.1051/limn/2023008.

Cepon-Robins, T. J., E. K. Mallott, I. C. Recca, et al. (2023). “Exploring biocultural determinants of intestinal health: Do resource access and parasite exposure contribute to intestinal inflammation among a preliminary sample of children in rural Mississippi?” In: American Journal of Biological Anthropology 182.4. Cited by: 8, p. 606 – 619. DOI: 10.1002/ajpa.24574.

Dacks, J. B. and M. L. Ginger (2023). “Two decades taken at speed: genomics, cell biology, ecology, and evolution of protists”. In: BMC Biology 21.1. Cited by: 2; All Open Access, Gold Open Access, Green Open Access. DOI: 10.1186/s12915-023-01787-9.

Gaonkar, C. C. and L. Campbell (2023). “Metabarcoding reveals high genetic diversity of harmful algae in the coastal waters of Texas, Gulf of Mexico”. In: Harmful Algae 121. Cited by: 11; All Open Access, Bronze Open Access. DOI: 10.1016/j.hal.2022.102368.

González-Miguéns, R., E. Cano, A. Guillén-Oterino, et al. (2023). “A needle in a haystack: A new metabarcoding approach to survey diversity at the species level of Arcellinida (Amoebozoa: Tubulinea)”. In: Molecular Ecology Resources 23.5. Cited by: 7; All Open Access, Green Open Access, Hybrid Gold Open Access, p. 1034 – 1049. DOI: 10.1111/1755-0998.13771.

Groussman, R., S. Blaskowski, S. Coesel, et al. (2023). “MarFERReT, an open-source, version-controlled reference library of marine microbial eukaryote functional genes”. In: Scientific Data 10.1. Cited by: 6; All Open Access, Gold Open Access. DOI: 10.1038/s41597-023-02842-4.

Ikenoue, T., K. R. Bjørklund, A. K. Krabberød, et al. (2023). “Radiolaria and Phaeodaria (siliceous Rhizaria) in south-western and northern Norwegian fjords during late summer 2016: dominant species and biomass in shallow-water assemblages”. In: Polar Research 42. Cited by: 0; All Open Access, Gold Open Access, Green Open Access. DOI: 10.33265/polar.v42.9584.

Lefler, F. W., D. E. Berthold, and H. D. Laughinghouse (2023). “Cyanoseq: A database of cyanobacterial 16S rRNA gene sequences with curated taxonomy”. In: Journal of Phycology 59.3. Cited by: 29; All Open Access, Bronze Open Access, p. 470 – 480. DOI: 10.1111/jpy.13335.

Panova, M. A. Z., M. A. Varfolomeeva, E. R. Gafarova, et al. (2023). “First insights into the gut microbiomes and the diet of the Littorina snail ecotypes, a recently emerged marine evolutionary model”. In: Evolutionary Applications 16.2. Cited by: 8; All Open Access, Gold Open Access, Green Open Access, p. 365 – 378. DOI: 10.1111/eva.13447.

Petersen, H. C., R. Sapkota, A. Hiillos, et al. (2023). “Spatial and temporal dynamics of coastal benthic microbial communities along a salinity gradient”. In: Aquatic Microbial Ecology 89. Cited by: 0; All Open Access, Green Open Access, p. 127 – 142. DOI: 10.3354/ame02002.

Wang, L., M. Zhao, X. Du, et al. (2023). “Fungi and cercozoa regulate methane-associated prokaryotes in wetland methane emissions”. In: Frontiers in Microbiology 13. Cited by: 6; All Open Access, Gold Open Access, Green Open Access. DOI: 10.3389/fmicb.2022.1076610.

Yadav, B. N. S., P. Sharma, S. Maurya, et al. (2023). “Metagenomics and metatranscriptomics as potential driving forces for the exploration of diversity and functions of micro-eukaryotes in soil”. In: 3 Biotech 13.12. Cited by: 2; All Open Access, Green Open Access. DOI: 10.1007/s13205-023-03841-3.

2022

Cahoon, A. B. and R. D. VanGundy (2022). “Alveolates (dinoflagellates, ciliates and apicomplexans) and Rhizarians are the most common microbial eukaryotes in temperate Appalachian karst caves”. In: Environmental Microbiology Reports 14.4. Cited by: 7; All Open Access, Green Open Access, p. 538 – 548. DOI: 10.1111/1758-2229.13060.

Caracciolo, M., F. Rigaut-Jalabert, S. Romac, et al. (2022). “Seasonal dynamics of marine protist communities in tidally mixed coastal waters”. In: Molecular Ecology 31.14. Cited by: 18; All Open Access, Green Open Access, Hybrid Gold Open Access, p. 3761 – 3783. DOI: 10.1111/mec.16539.

Cho, A., D. V. Tikhonenkov, E. Hehenberger, et al. (2022). “Monophyly of diverse Bigyromonadea and their impact on phylogenomic relationships within stramenopiles”. In: Molecular Phylogenetics and Evolution 171. Cited by: 13; All Open Access, Green Open Access. DOI: 10.1016/j.ympev.2022.107468.

Czech, L., A. Stamatakis, M. Dunthorn, et al. (2022). “Metagenomic Analysis Using Phylogenetic Placement—A Review of the First Decade”. In: Frontiers in Bioinformatics 2. Cited by: 23; All Open Access, Gold Open Access, Green Open Access. DOI: 10.3389/fbinf.2022.871393.

De Assis Leite, D. C. and N. C. Gabiatti (2022). Advances in Microbial Molecular Biology: The Potential of the Tool for Agrobiotechnology. Cited by: 0 , p. 35 – 76. DOI: 10.1201/9781003110477-2.

Duerschlag, J., W. Mohr, T. G. Ferdelman, et al. (2022). “Niche partitioning by photosynthetic plankton as a driver of CO2-fixation across the oligotrophic South Pacific Subtropical Ocean”. In: ISME Journal 16.2. Cited by: 14; All Open Access, Green Open Access, Hybrid Gold Open Access, p. 465 – 476. DOI: 10.1038/s41396-021-01072-z.

Eshghi Sahraei, S., B. Furneaux, K. Kluting, et al. (2022). “Effects of operational taxonomic unit inference methods on soil microeukaryote community analysis using long-read metabarcoding”. In: Ecology and Evolution 12.3. Cited by: 5; All Open Access, Gold Open Access, Green Open Access. DOI: 10.1002/ece3.8676.

Frantal, D., S. Agatha, D. Beisser, et al. (2022). “Molecular Data Reveal a Cryptic Diversity in the Genus Urotricha (Alveolata, Ciliophora, Prostomatida), a Key Player in Freshwater Lakes, With Remarks on Morphology, Food Preferences, and Distribution”. In: Frontiers in Microbiology 12. Cited by: 18; All Open Access, Gold Open Access, Green Open Access. DOI: 10.3389/fmicb.2021.787290.

Hammond, S. W., L. Lodolo, S. K. Hu, et al. (2022). “Methodological ‘lenses’ influence the characterization of phytoplankton dynamics in a coastal upwelling ecosystem”. In: Environmental Microbiology Reports 14.6. Cited by: 3, p. 897 – 906. DOI: 10.1111/1758-2229.13116.

Igai, K., O. Kitade, J. Fu, et al. (2022). “Fine-scale genetic diversity and putative ecotypes of oxymonad protists coinhabiting the hindgut of Reticulitermes speratus”. In: Molecular Ecology 31.4. Cited by: 4, p. 1317 – 1331. DOI: 10.1111/mec.16309.

Kanjer, L., K. Filek, M. Mucko, et al. (2022). “Surface microbiota of Mediterranean loggerhead sea turtles unraveled by 16S and 18S amplicon sequencing”. In: Frontiers in Ecology and Evolution 10. Cited by: 9; All Open Access, Gold Open Access, Green Open Access. DOI: 10.3389/fevo.2022.907368.

Martins, S. J., S. J. Taerum, L. Triplett, et al. (2022). “Predators of Soil Bacteria in Plant and Human Health”. In: Phytobiomes Journal 6.3. Cited by: 22; All Open Access, Gold Open Access, p. 184 – 200. DOI: 10.1094/PBIOMES-11-21-0073-RVW.

Metz, S., P. Huber, V. Accattatis, et al. (2022). “Freshwater protists: unveiling the unexplored in a large floodplain system”. In: Environmental Microbiology 24.4. Cited by: 12, p. 1731 – 1745. DOI: 10.1111/1462-2920.15838.

Reid, B. N., J. A. Servis, M. Timmers, et al. (2022). “18S rDNA amplicon sequence data (V1-V3) of the Palmyra Atoll National Wildlife Refuge, Central Pacific”. In: Metabarcoding and Metagenomics 6. Cited by: 1; All Open Access, Gold Open Access, Green Open Access, p. 89 – 99. DOI: 10.3897/mbmg.6.78762.

Sandin, M. M., S. Romac, and F. Not (2022). “Intra-genomic rRNA gene variability of Nassellaria and Spumellaria (Rhizaria, Radiolaria) assessed by Sanger, MinION and Illumina sequencing”. In: Environmental Microbiology 24.7. Cited by: 10; All Open Access, Green Open Access, Hybrid Gold Open Access, p. 2979 – 2993. DOI: 10.1111/1462-2920.16081.

Sterling, A. R., L. Z. Holland, R. M. Bundy, et al. (2022). “Potential interactions between diatoms and bacteria are shaped by trace element gradients in the Southern Ocean”. In: Frontiers in Marine Science 9. Cited by: 4; All Open Access, Gold Open Access. DOI: 10.3389/fmars.2022.876830.

Tikhonenkov, D. V., M. Jamy, A. S. Borodina, et al. (2022). “On the origin of TSAR: Morphology, diversity and phylogeny of Telonemia”. In: Open Biology 12.3. Cited by: 11; All Open Access, Gold Open Access, Green Open Access. DOI: 10.1098/rsob.210325.

Zafeiropoulos, H., S. Paragkamian, S. Ninidakis, et al. (2022). “PREGO: A Literature and Data-Mining Resource to Associate Microorganisms, Biological Processes, and Environment Types”. In: Microorganisms 10.2. Cited by: 14; All Open Access, Gold Open Access, Green Open Access. DOI: 10.3390/microorganisms10020293.

Zhao, Y. and G. A. Langlois (2022). “Ciliate Morpho-Taxonomy and Practical Considerations before Deploying Metabarcoding to Ciliate Community Diversity Surveys in Urban Receiving Waters”. In: Microorganisms 10.12. Cited by: 1; All Open Access, Gold Open Access, Green Open Access. DOI: 10.3390/microorganisms10122512.

2021

Burki, F., M. M. Sandin, and M. Jamy (2021). “Diversity and ecology of protists revealed by metabarcoding”. In: Current Biology 31.19. Cited by: 102; All Open Access, Green Open Access, Hybrid Gold Open Access, p. R1267 – R1280. DOI: 10.1016/j.cub.2021.07.066.

Campbell, L., C. C. Gaonkar, and D. W. Henrichs (2021). Integrating imaging and molecular approaches to assess phytoplankton diversity. Cited by: 5 , p. 159 – 190. DOI: 10.1016/B978-0-12-822861-6.00013-3.

Canino, A., A. Bouchez, C. Laplace-Treyture, et al. (2021). “Phytool, a ShinyApp to homogenise taxonomy of freshwater microalgae from DNA barcodes and microscopic observations”. In: Metabarcoding and Metagenomics 5. Cited by: 7; All Open Access, Gold Open Access, Green Open Access, p. 199 – 205. DOI: 10.3897/mbmg.5.74096.

Dias, R. J. P., P. M. de Souza, M. F. Rossi, et al. (2021). “Ciliates as bioindicators of water quality: A case study in the neotropical region and evidence of phylogenetic signals (18S-rDNA)”. In: Environmental Pollution 268. Cited by: 12. DOI: 10.1016/j.envpol.2020.115760.

Díaz-Torres, O., J. de Anda, O. Y. Lugo-Melchor, et al. (2021). “Rapid Changes in the Phytoplankton Community of a Subtropical, Shallow, Hypereutrophic Lake During the Rainy Season”. In: Frontiers in Microbiology 12. Cited by: 28; All Open Access, Gold Open Access, Green Open Access. DOI: 10.3389/fmicb.2021.617151.

Dumack, K. and M. Bonkowski (2021). “Protists in the plant microbiome: an untapped field of research”. In: Methods in Molecular Biology 2232. Cited by: 5, p. 77 – 84. DOI: 10.1007/978-1-0716-1040-4_8.

Gao, B., L. Chi, Y. Zhu, et al. (2021). “An introduction to next generation sequencing bioinformatic analysis in gut microbiome studies”. In: Biomolecules 11.4. Cited by: 99; All Open Access, Gold Open Access, Green Open Access. DOI: 10.3390/biom11040530.

Greco, M., R. Morard, and M. Kucera (2021). “Single-cell metabarcoding reveals biotic interactions of the Arctic calcifier Neogloboquadrina pachyderma with the eukaryotic pelagic community”. In: Journal of Plankton Research 43.2. Cited by: 16; All Open Access, Bronze Open Access, Green Open Access, p. 113 – 125. DOI: 10.1093/plankt/fbab015.

Lavrinienko, A., T. Jernfors, J. J. Koskimäki, et al. (2021). “Does Intraspecific Variation in rDNA Copy Number Affect Analysis of Microbial Communities?” In: Trends in Microbiology 29.1. Cited by: 79; All Open Access, Green Open Access, Hybrid Gold Open Access, p. 19 – 27. DOI: 10.1016/j.tim.2020.05.019.

Mann, D. G., R. Trobajo, S. Sato, et al. (2021). “Ripe for reassessment: A synthesis of available molecular data for the speciose diatom family Bacillariaceae”. In: Molecular Phylogenetics and Evolution 158. Cited by: 47; All Open Access, Green Open Access. DOI: 10.1016/j.ympev.2020.106985.

Martini, S., F. Larras, A. Boyé, et al. (2021). “Functional trait-based approaches as a common framework for aquatic ecologists”. In: Limnology and Oceanography 66.3. Cited by: 125; All Open Access, Green Open Access, Hybrid Gold Open Access, p. 965 – 994. DOI: 10.1002/lno.11655.

Obertegger, U., M. Pindo, and G. Flaim (2021). “Do inferences about freshwater phytoplankton communities change when based on microscopy or high-throughput sequencing data?” In: Freshwater Biology 66.4. Cited by: 7, p. 640 – 655. DOI: 10.1111/fwb.13667.

Rajter, Ľ., I. Ewers, N. Graupner, et al. (2021). “Colpodean ciliate phylogeny and reference alignments for phylogenetic placements”. In: European Journal of Protistology 77. Cited by: 4. DOI: 10.1016/j.ejop.2020.125747.

Regaldo, L., V. E. Márquez, M. G. Latorre Rapela, et al. (2021). Prokaryotic and Eukaryotic Diversity in Wastewater Treatment: Phenotypic Characterization, Molecular Techniques, and Bioprospecting. Cited by: 0 , p. 343 – 365. DOI: 10.1016/B978-0-12-821881-5.00017-9.

Rimet, F., E. Aylagas, A. Borja, et al. (2021). “Metadata standards and practical guidelines for specimen and DNA curation when building barcode reference libraries for aquatic life”. In: Metabarcoding and Metagenomics 5. Cited by: 30; All Open Access, Gold Open Access, Green Open Access, p. 17 – 33. DOI: 10.3897/mbmg.5.58056.

Schiwitza, S. and F. Nitsche (2021). “A Needle in the Haystack – Mapping Sequences to Morphology Exemplified by the Loricate Choanoflagellate Enibas thessalia sp. nov. (Acanthoecida, Acanthoecidae)”. In: Protist 172.1. Cited by: 6. DOI: 10.1016/j.protis.2020.125782.

Snyder, R. A., J. A. Moss, L. Santoferrara, et al. (2021). “Ciliate microzooplankton from the Northeastern Gulf of Mexico”. In: ICES Journal of Marine Science 78.9. Cited by: 7, p. 3356 – 3371. DOI: 10.1093/icesjms/fsab002.

Tedersoo, L., M. Albertsen, S. Anslan, et al. (2021). “Perspectives and Benefits of High-Throughput Long-Read Sequencing in Microbial Ecology”. In: Applied and Environmental Microbiology 87.17. Cited by: 120; All Open Access, Green Open Access, p. 1 – 19. DOI: 10.1128/AEM.00626-21.

Tonjer, L., E. Thoen, L. Morgado, et al. (2021). “Fungal community dynamics across a forest–alpine ecotone”. In: Molecular Ecology 30.19. Cited by: 18; All Open Access, Green Open Access, p. 4926 – 4938. DOI: 10.1111/mec.16095.

Walker, L. M., T. Hoppe, and M. E. Silliker (2021). Molecular techniques and current research approaches. Cited by: 4 , p. 195 – 229. DOI: 10.1016/B978-0-12-824281-0.00006-3.

Zhou, Y., B. Sun, B. Xie, et al. (2021). “Warming reshaped the microbial hierarchical interactions”. In: Global Change Biology 27.24. Cited by: 142, p. 6331 – 6347. DOI: 10.1111/gcb.15891.

2020

Djemiel, C., D. Plassard, S. Terrat, et al. (2020). “µgreen-db: A reference database for the 23S rRNA gene of eukaryotic plastids and cyanobacteria”. In: Scientific Reports 10.1. Cited by: 24; All Open Access, Gold Open Access, Green Open Access. DOI: 10.1038/s41598-020-62555-1.

Fawley, M. W. and K. P. Fawley (2020). “Identification of eukaryotic microalgal strains”. In: Journal of Applied Phycology 32.5. Cited by: 32; All Open Access, Bronze Open Access, Green Open Access, p. 2699 – 2709. DOI: 10.1007/s10811-020-02190-5.

Fiore-Donno, A. M., T. Richter-Heitmann, and M. Bonkowski (2020). “Contrasting Responses of Protistan Plant Parasites and Phagotrophs to Ecosystems, Land Management and Soil Properties”. In: Frontiers in Microbiology 11. Cited by: 28; All Open Access, Gold Open Access, Green Open Access. DOI: 10.3389/fmicb.2020.01823.

Gottschling, M., J. Chacón, A. Žerdoner Čalasan, et al. (2020). “Phylogenetic placement of environmental sequences using taxonomically reliable databases helps to rigorously assess dinophyte biodiversity in Bavarian lakes (Germany)”. In: Freshwater Biology 65.2. Cited by: 22; All Open Access, Green Open Access, Hybrid Gold Open Access, p. 193 – 208. DOI: 10.1111/fwb.13413.

Irion, S., L. Jardillier, I. Sassenhagen, et al. (2020). “Marked spatiotemporal variations in small phytoplankton structure in contrasted waters of the Southern Ocean (Kerguelen area)”. In: Limnology and Oceanography 65.11. Cited by: 14; All Open Access, Green Open Access, Hybrid Gold Open Access, p. 2835 – 2852. DOI: 10.1002/lno.11555.

Kolisko, M., O. Flegontova, A. Karnkowska, et al. (2020). “EukRef-excavates: Seven curated SSU ribosomal RNA gene databases”. In: Database 2020. Cited by: 17; All Open Access, Gold Open Access, Green Open Access. DOI: 10.1093/database/baaa080.

Lukešová, S., M. Karlicki, L. Tomečková Hadariová, et al. (2020). “Analyses of environmental sequences and two regions of chloroplast genomes revealed the presence of new clades of photosynthetic euglenids in marine environments”. In: Environmental Microbiology Reports 12.1. Cited by: 6, p. 78 – 91. DOI: 10.1111/1758-2229.12817.

Mann, A. E., F. Mazel, M. A. Lemay, et al. (2020). “Biodiversity of protists and nematodes in the wild nonhuman primate gut”. In: ISME Journal 14.2. Cited by: 35; All Open Access, Green Open Access, Hybrid Gold Open Access, p. 609 – 622. DOI: 10.1038/s41396-019-0551-4.

Santoferrara, L. F. and G. B. McManus (2020). Diversity and biogeography as revealed by morphologies and DNA sequences: Tintinnid ciliates as an example. Cited by: 20 , p. 85 – 118.

Santoferrara, L., F. Burki, S. Filker, et al. (2020). “Perspectives from Ten Years of Protist Studies by High-Throughput Metabarcoding”. In: Journal of Eukaryotic Microbiology 67.5. Cited by: 81; All Open Access, Green Open Access, p. 612 – 622. DOI: 10.1111/jeu.12813.

Tůmová, P., E. Nohýnková, A. Klingl, et al. (2020). “A rapid workflow for the characterization of small numbers of unicellular eukaryotes by using correlative light and electron microscopy”. In: Journal of Microbiological Methods 172. Cited by: 5. DOI: 10.1016/j.mimet.2020.105888.

2019

Adl, S. M., D. Bass, C. E. Lane, et al. (2019). “Revisions to the Classification, Nomenclature, and Diversity of Eukaryotes”. In: Journal of Eukaryotic Microbiology 66.1. Cited by: 967; All Open Access, Green Open Access, Hybrid Gold Open Access, p. 4 – 119. DOI: 10.1111/jeu.12691.

Caron, D. A. and S. K. Hu (2019). “Are We Overestimating Protistan Diversity in Nature?” In: Trends in Microbiology 27.3. Cited by: 73; All Open Access, Green Open Access, p. 197 – 205. DOI: 10.1016/j.tim.2018.10.009.

Del Campo, J., T. J. Heger, R. Rodríguez-Martínez, et al. (2019). “Assessing the diversity and distribution of apicomplexans in host and free-living environments using high-throughput amplicon data and a phylogenetically informed reference framework”. In: Frontiers in Microbiology 10.OCT. Cited by: 36; All Open Access, Gold Open Access, Green Open Access. DOI: 10.3389/fmicb.2019.02373.

Ku, C. and A. Sebé-Pedrós (2019). “Using single-cell transcriptomics to understand functional states and interactions in microbial eukaryotes”. In: Philosophical Transactions of the Royal Society B: Biological Sciences 374.1786. Cited by: 24; All Open Access, Bronze Open Access, Green Open Access. DOI: 10.1098/rstb.2019.0098.

Linard, B., K. Swenson, and F. Pardi (2019). “Rapid alignment-free phylogenetic identification of metagenomic sequences”. In: Bioinformatics 35.18. Cited by: 33; All Open Access, Green Open Access, p. 3303 – 3312. DOI: 10.1093/bioinformatics/btz068.

Lutz, S., L. Procházková, L. G. Benning, et al. (2019). “Evaluating amplicon high–throughput sequencing data of microalgae living in melting snow: Improvements and limitations”. In: Fottea 19.2. Cited by: 22; All Open Access, Gold Open Access, Green Open Access, p. 115 – 131. DOI: 10.5507/fot.2019.003.

Metz, S., D. Singer, I. Domaizon, et al. (2019). “Global distribution of Trebouxiophyceae diversity explored by high-throughput sequencing and phylogenetic approaches”. In: Environmental Microbiology 21.10. Cited by: 17; All Open Access, Green Open Access, p. 3885 – 3895. DOI: 10.1111/1462-2920.14738.

Morard, R., N. M. Vollmar, M. Greco, et al. (2019). “Unassigned diversity of planktonic foraminifera from environmental sequencing revealed as known but neglected species”. In: PLoS ONE 14.3. Cited by: 22; All Open Access, Gold Open Access, Green Open Access. DOI: 10.1371/journal.pone.0213936.

PrzyboŚ, E. and S. Tarcz (2019). “Global molecular variation of Paramecium jenningsi complex (Ciliophora, Protista): a starting point for further, detailed biogeography surveys”. In: Systematics and Biodiversity 17.5. Cited by: 8, p. 527 – 539. DOI: 10.1080/14772000.2019.1643424.

Richardson, E. and J. B. Dacks (2019). “Microbial Eukaryotes in oil sands environments: Heterotrophs in the spotlight”. In: Microorganisms 7.6. Cited by: 6; All Open Access, Gold Open Access, Green Open Access. DOI: 10.3390/microorganisms7060178.

Rimet, F., E. Gusev, M. Kahlert, et al. (2019). “Diat.barcode, an open-access curated barcode library for diatoms”. In: Scientific Reports 9.1. Cited by: 117; All Open Access, Gold Open Access, Green Open Access. DOI: 10.1038/s41598-019-51500-6.

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2018

Duarte, S., L. Nunes, P. A. Borges, et al. (2018). “A bridge too far? An integrative framework linking classical protist taxonomy and metabarcoding in lower termites”. In: Frontiers in Microbiology 9.NOV. Cited by: 4; All Open Access, Gold Open Access, Green Open Access. DOI: 10.3389/fmicb.2018.02620.