Papers citing PR2

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Guillou, L., Bachar, D., Audic, S., Bass, D., Berney, C., Bittner, L., Boutte, C., Burgaud, G., de Vargas, C., Decelle, J., del Campo, J., Dolan, J. R., Dunthorn, M., Edvardsen, B., Holzmann, M., Kooistra, W. H. C. F., Lara, E., Le Bescot, N., Logares, R., … Christen, R. (2013). The Protist Ribosomal Reference database (PR2): A catalog of unicellular eukaryote Small Sub-Unit rRNA sequences with curated taxonomy. Nucleic Acids Research, 41(D1), D597–D604. https://doi.org/10.1093/nar/gks1160

2021

Bruhn, C., S. Wohlrab, B. Krock, et al. (2021). “Seasonal Plankton Succession Is in Accordance with Phycotoxin Occurrence in Disko Bay, West Greenland”. In: Harmful Algae 103. cited By 0. DOI: 10.1016/j.hal.2021.101978.

Cecchetto, M., A. Di Cesare, E. Eckert, et al. (2021). “Antarctic Coastal Nanoplankton Dynamics Revealed by Metabarcoding of Desalination Plant Filters: Detection of Short-Term Events and Implications for Routine Monitoring”. In: Science of the Total Environment 757. cited By 0. DOI: 10.1016/j.scitotenv.2020.143809.

Choe, Y., M. Kim, and Y. Lee (2021). “Distinct Microbial Communities in Adjacent Rock and Soil Substrates on a High Arctic Polar Desert”. In: Frontiers in Microbiology 11. cited By 0. DOI: 10.3389/fmicb.2020.607396.

Cohen, N., M. McIlvin, D. Moran, et al. (2021). “Dinoflagellates Alter Their Carbon and Nutrient Metabolic Strategies across Environmental Gradients in the Central Pacific Ocean”. In: Nature Microbiology 6.2. cited By 1, pp. 173-186. DOI: 10.1038/s41564-020-00814-7.

Doliwa, A., M. Dunthorn, E. Rassoshanska, et al. (2021). “Identifying Potential Hosts of Short-Branch Microsporidia”. In: Microbial Ecology. cited By 0. DOI: 10.1007/s00248-020-01657-9.

Dumack, K. and M. Bonkowski (2021). “Protists in the Plant Microbiome: An Untapped Field of Research”. In: Methods in Molecular Biology 2232. cited By 0, pp. 77-84. DOI: 10.1007/978-1-0716-1040-4_8.

Forster, D., Z. Qu, G. Pitsch, et al. (2021). “Lake Ecosystem Robustness and Resilience Inferred from a Climate-Stressed Protistan Plankton Network”. In: Microorganisms 9.3. cited By 0, pp. 1-20. DOI: 10.3390/microorganisms9030549.

Francioli, D., G. Lentendu, S. Lewin, et al. (2021). “DNA Metabarcoding for the Characterization of Terrestrial Microbiota—Pitfalls and Solutions". In: Microorganisms 9.2. cited By 0, pp. 1-29. DOI: 10.3390/microorganisms9020361.

Gong, X., X. Chen, S. Geisen, et al. (2021). “Agricultural Habitats Are Dominated by Rapidly Evolving Nematodes Revealed through Phylogenetic Comparative Methods”. In: Soil Biology and Biochemistry 155. cited By 0. DOI: 10.1016/j.soilbio.2021.108183.

Gottschling, M., L. Czech, F. Mahé, et al. (2021). “The Windblown: Possible Explanations for Dinophyte DNA in Forest Soils”. In: Journal of Eukaryotic Microbiology 68.1. cited By 0. DOI: 10.1111/jeu.12833.

Hilton, S., E. Picot, S. Schreiter, et al. (2021). “Identification of Microbial Signatures Linked to Oilseed Rape Yield Decline at the Landscape Scale”. In: Microbiome 9.1. cited By 0. DOI: 10.1186/s40168-020-00972-0.

Iniesto, M., D. Moreira, G. Reboul, et al. (2021). “Core Microbial Communities of Lacustrine Microbialites Sampled along an Alkalinity Gradient”. In: Environmental Microbiology 23.1. cited By 0, pp. 51-68. DOI: 10.1111/1462-2920.15252.

Käse, L., K. Metfies, S. Neuhaus, et al. (2021). “Host-Parasitoid Associations in Marine Planktonic Time Series: Can Metabarcoding Help Reveal Them?” In: PLoS ONE 16 (1 January). cited By 0. DOI: 10.1371/journal.pone.0244817.

Kawamoto, Y., H. Kato, Y. Nagata, et al. (2021). “Microbial Communities Developing within Bulk Sediments under Fish Carcasses on a Tidal Flat”. In: PLoS ONE 16 (2 February). cited By 0. DOI: 10.1371/journal.pone.0247220.

KulaÅ¡, A., V. Gulin, R. Matoničkin Kepčija, et al. (2021). “Ciliates (Alveolata, Ciliophora) as Bioindicators of Environmental Pressure: A Karstic River Case”. In: Ecological Indicators 124. cited By 0. DOI: 10.1016/j.ecolind.2021.107430.

Li, R., C. Hu, J. Wang, et al. (2021). “Biogeographical Distribution and Community Assembly of Active Protistan Assemblages along an Estuary to a Basin Transect of the Northern South China Sea”. In: Microorganisms 9.2. cited By 0, pp. 1-20. DOI: 10.3390/microorganisms9020351.

McLennan, K., R. Ruvindy, M. Ostrowski, et al. (2021). “Assessing the Use of Molecular Barcoding and QPCR for Investigating the Ecology of Prorocentrum Minimum (Dinophyceae), a Harmful Algal Species”. In: Microorganisms 9.3. cited By 0, pp. 1-20. DOI: 10.3390/microorganisms9030510.

Nowinski, B. and M. Moran (2021). “Niche Dimensions of a Marine Bacterium Are Identified Using Invasion Studies in Coastal Seawater”. In: Nature Microbiology. cited By 0. DOI: 10.1038/s41564-020-00851-2.

Obertegger, U., M. Pindo, and G. Flaim (2021). “Do Inferences about Freshwater Phytoplankton Communities Change When Based on Microscopy or High-Throughput Sequencing Data?” In: Freshwater Biology 66.4. cited By 0, pp. 640-655. DOI: 10.1111/fwb.13667.

Ollison, G., S. Hu, L. Mesrop, et al. (2021). “Come Rain or Shine: Depth Not Season Shapes the Active Protistan Community at Station ALOHA in the North Pacific Subtropical Gyre”. In: Deep-Sea Research Part I: Oceanographic Research Papers. cited By 0. DOI: 10.1016/j.dsr.2021.103494.

Rüger, L., K. Feng, K. Dumack, et al. (2021). “Assembly Patterns of the Rhizosphere Microbiome along the Longitudinal Root Axis of Maize (Zea Mays l.)”. In: Frontiers in Microbiology 12. cited By 0. DOI: 10.3389/fmicb.2021.614501.

Ramond, P., R. Siano, S. Schmitt, et al. (2021). “Phytoplankton Taxonomic and Functional Diversity Patterns across a Coastal Tidal Front”. In: Scientific Reports 11.1. cited By 0. DOI: 10.1038/s41598-021-82071-0.

Ricci, F., A. Fordyce, W. Leggat, et al. (2021). “Multiple Techniques Point to Oxygenic Phototrophs Dominating the Isopora Palifera Skeletal Microbiome”. In: Coral Reefs. cited By 0. DOI: 10.1007/s00338-021-02068-z.

Roshan, S., K. Dumack, M. Bonkowski, et al. (2021). “Taxonomic and Functional Diversity of Heterotrophic Protists (Cercozoa and Endomyxa) from Biological Soil Crusts”. In: Microorganisms 9.2. cited By 0, pp. 1-14. DOI: 10.3390/microorganisms9020205.

Schiwitza, S. and F. Nitsche (2021). “A Needle in the Haystack – Mapping Sequences to Morphology Exemplified by the Loricate Choanoflagellate Enibas Thessalia Sp. Nov. (Acanthoecida, Acanthoecidae)”. In: Protist 172.1. cited By 0. DOI: 10.1016/j.protis.2020.125782.

Shore, A., R. Day, J. Stewart, et al. (2021). “Dichotomy between Regulation of Coral Bacterial Communities and Calcification Physiology under Ocean Acidification Conditions”. In: Applied and Environmental Microbiology 87.6. cited By 0, pp. 1-18. DOI: 10.1128/AEM.02189-20.

Singer, D., C. Seppey, G. Lentendu, et al. (2021). “Protist Taxonomic and Functional Diversity in Soil, Freshwater and Marine Ecosystems”. In: Environment International 146. cited By 1. DOI: 10.1016/j.envint.2020.106262.

Sun, A., X. Jiao, Q. Chen, et al. (2021). “Fertilization Alters Protistan Consumers and Parasites in Crop-Associated Microbiomes”. In: Environmental Microbiology. cited By 0. DOI: 10.1111/1462-2920.15385.

Thioye, B., H. Sanguin, A. Kane, et al. (2021). “Mycorrhizal Inoculation Increases Fruit Production without Disturbance of Native Arbuscular Mycorrhizal Community in Jujube Tree Orchards (Senegal)”. In: Symbiosis. cited By 0. DOI: 10.1007/s13199-021-00757-5.

Trefault, N., R. De la Iglesia, M. Moreno-Pino, et al. (2021). “Annual Phytoplankton Dynamics in Coastal Waters from Fildes Bay, Western Antarctic Peninsula”. In: Scientific Reports 11.1. cited By 0. DOI: 10.1038/s41598-020-80568-8.

Vega, L., J. Jaimes, D. Morales, et al. (2021). “Microbial Communities’ Characterization in Urban Recreational Surface Waters Using next Generation Sequencing”. In: Microbial Ecology. cited By 0. DOI: 10.1007/s00248-020-01649-9.

Vernette, C., N. Henry, J. Lecubin, et al. (2021). “The Ocean Barcode Atlas: A Web Service to Explore the Biodiversity and Biogeography of Marine Organisms”. In: Molecular Ecology Resources. cited By 0. DOI: 10.1111/1755-0998.13322.

Wang, C., A. Masoudi, M. Wang, et al. (2021). “Land-Use Types Shape Soil Microbial Compositions under Rapid Urbanization in the Xiong’an New Area, China”. In: Science of the Total Environment 777. cited By 0. DOI: 10.1016/j.scitotenv.2021.145976.

Wang, K., Y. Huang, M. Majaneva, et al. (2021). “Group 2i Isochrysidales Produce Characteristic Alkenones Reflecting Sea Ice Distribution”. In: Nature Communications 12.1. cited By 0. DOI: 10.1038/s41467-020-20187-z.

Xiong, W., A. Jousset, R. Li, et al. (2021). “A Global Overview of the Trophic Structure within Microbiomes across Ecosystems”. In: Environment International 151. cited By 0. DOI: 10.1016/j.envint.2021.106438.

Zamora-Terol, S., A. Novotny, and M. Winder (2021). “Molecular Evidence of Host-Parasite Interactions between Zooplankton and Syndiniales”. In: Aquatic Ecology 55.1. cited By 0, pp. 125-134. DOI: 10.1007/s10452-020-09816-3.

Zhang, L., S. Xu, Z. Zhao, et al. (2021). “Precision of eDNA Metabarcoding Technology for Biodiversity Monitoring of Eukaryotic Phytoplankton in Lakes [环境DNA宏条形码监测湖泊真核浮游植物的精准性]”. In: Huanjing Kexue/Environmental Science 42.2. cited By 0, pp. 796-807. DOI: 10.13227/j.hjkx.202007236.

Zhang, S., X. Xia, Y. Ke, et al. (2021). “Population Dynamics and Interactions of Noctiluca Scintillans and Mesodinium Rubrum during Their Successive Blooms in a Subtropical Coastal Water”. In: Science of the Total Environment 755. cited By 0. DOI: 10.1016/j.scitotenv.2020.142349.

Zhao, F., S. Filker, C. Wang, et al. (2021). “Bathymetric Gradient Shapes the Community Composition Rather than the Species Richness of Deep-Sea Benthic Ciliates”. In: Science of the Total Environment 755. cited By 0. DOI: 10.1016/j.scitotenv.2020.142623.

Zhao, F., Y. Wang, S. Zheng, et al. (2021). “Patterns and Drivers of Microeukaryotic Distribution along the North Equatorial Current from the Central Pacific Ocean to the South China Sea”. In: Marine Pollution Bulletin 165. cited By 0. DOI: 10.1016/j.marpolbul.2021.112091.

Zheng, X., K. Zhang, T. Yang, et al. (2021). “Sediment Resuspension Drives Protist Metacommunity Structure and Assembly in Grass Carp (Ctenopharyngodon Idella) Aquaculture Ponds”. In: Science of the Total Environment 764. cited By 1. DOI: 10.1016/j.scitotenv.2020.142840.

2020

Živaljić, S., A. Scherwass, A. Schoenle, et al. (2020). “A Barotolerant Ciliate Isolated from the Abyssal Deep Sea of the North Atlantic: Euplotes Dominicanus Sp. n. (Ciliophora, Euplotia)”. In: European Journal of Protistology 73. cited By 4. DOI: 10.1016/j.ejop.2019.125664.

Abdala Asbun, A., M. Besseling, S. Balzano, et al. (2020). “Cascabel: A Scalable and Versatile Amplicon Sequence Data Analysis Pipeline Delivering Reproducible and Documented Results”. In: Frontiers in Genetics 11. cited By 1. DOI: 10.3389/fgene.2020.489357.

Allen, R., T. Summerfield, K. Currie, et al. (2020). “Distinct Processes Structure Bacterioplankton and Protist Communities across an Oceanic Front”. In: Aquatic Microbial Ecology 85. cited By 0, pp. 19-34. DOI: 10.3354/AME01938.

Alric, B., C. ter Braak, Y. Desdevises, et al. (2020). “Investigating Microbial Associations from Sequencing Survey Data with Co-Correspondence Analysis”. In: Molecular Ecology Resources 20.2. cited By 1, pp. 468-480. DOI: 10.1111/1755-0998.13126.

Ammon, U. von, A. Jeffs, A. Zaiko, et al. (2020). “A Portable Cruising Speed Net: Expanding Global Collection of Sea Surface Plankton Data”. In: Frontiers in Marine Science 7. cited By 0. DOI: 10.3389/fmars.2020.615458.

Annenkova, N., C. Giner, and R. Logares (2020). “Tracing the Origin of Planktonic Protists in an Ancient Lake”. In: Microorganisms 8.4. cited By 3. DOI: 10.3390/microorganisms8040543.

Armbrecht, L. (2020). “The Potential of Sedimentary Ancient DNA to Reconstruct Past Ocean Ecosystems”. In: Oceanography 33.2. cited By 1, pp. 116-123. DOI: 10.5670/oceanog.2020.211.

Arsenieff, L., F. Le Gall, F. Rigaut-Jalabert, et al. (2020). “Diversity and Dynamics of Relevant Nanoplanktonic Diatoms in the Western English Channel”. In: ISME Journal 14.8. cited By 1, pp. 1966-1981. DOI: 10.1038/s41396-020-0659-6.

Atienza, S., M. Guardiola, K. Præbel, et al. (2020). “DNA Metabarcoding of Deep-Sea Sediment Communities Using COI: Community Assessment, Spatio-Temporal Patterns and Comparison with 18S rDNA”. In: Diversity 12.4. cited By 2. DOI: 10.3390/D12040123.

Barrenechea Angeles, I., F. Lejzerowicz, T. Cordier, et al. (2020). “Planktonic Foraminifera eDNA Signature Deposited on the Seafloor Remains Preserved after Burial in Marine Sediments”. In: Scientific Reports 10.1. cited By 0. DOI: 10.1038/s41598-020-77179-8.

Bastida, F., D. Eldridge, S. Abades, et al. (2020). “Climatic Vulnerabilities and Ecological Preferences of Soil Invertebrates across Biomes”. In: Molecular Ecology 29.4. cited By 4, pp. 752-761. DOI: 10.1111/mec.15299.

Beam, J., S. George, N. Record, et al. (2020). “Mud, Microbes, and Macrofauna: Seasonal Dynamics of the Iron Biogeochemical Cycle in an Intertidal Mudflat”. In: Frontiers in Marine Science 7. cited By 0. DOI: 10.3389/fmars.2020.562617.

Bird, C., M. Schweizer, A. Roberts, et al. (2020). “The Genetic Diversity, Morphology, Biogeography, and Taxonomic Designations of Ammonia (Foraminifera) in the Northeast Atlantic”. In: Marine Micropaleontology 155. cited By 7. DOI: 10.1016/j.marmicro.2019.02.001.

Botnen, S., E. Thoen, P. Eidesen, et al. (2020). “Community Composition of Arctic Root-Associated Fungi Mirrors Host Plant Phylogeny”. In: FEMS Microbiology Ecology 96.11. cited By 0. DOI: 10.1093/femsec/fiaa185.

Busseni, G., L. Caputi, R. Piredda, et al. (2020). “Large Scale Patterns of Marine Diatom Richness: Drivers and Trends in a Changing Ocean”. In: Global Ecology and Biogeography 29.11. cited By 0, pp. 1915-1928. DOI: 10.1111/geb.13161.

Cai, R., E. Kayal, C. Alves-de-Souza, et al. (2020). “Cryptic Species in the Parasitic Amoebophrya Species Complex Revealed by a Polyphasic Approach”. In: Scientific Reports 10.1. cited By 2. DOI: 10.1038/s41598-020-59524-z.

Canals, O., A. Obiol, I. Muhovic, et al. (2020). “Ciliate Diversity and Distribution across Horizontal and Vertical Scales in the Open Ocean”. In: Molecular Ecology 29.15. cited By 1, pp. 2824-2839. DOI: 10.1111/mec.15528.

Carley, L., R. Panchagavi, X. Song, et al. (2020). “Long-Term Effects of Copper Nanopesticides on Soil and Sediment Community Diversity in Two Outdoor Mesocosm Experiments”. In: Environmental Science and Technology 54.14. cited By 3, pp. 8878-8889. DOI: 10.1021/acs.est.0c00510.

Catlett, D., P. Matson, C. Carlson, et al. (2020). “Evaluation of Accuracy and Precision in an Amplicon Sequencing Workflow for Marine Protist Communities”. In: Limnology and Oceanography: Methods 18.1. cited By 2, pp. 20-40. DOI: 10.1002/lom3.10343.

Clark, D., C. Pilditch, J. Pearman, et al. (2020). “Environmental DNA Metabarcoding Reveals Estuarine Benthic Community Response to Nutrient Enrichment – Evidence from an in-Situ Experiment”. In: Environmental Pollution 267. cited By 2. DOI: 10.1016/j.envpol.2020.115472.

Clarke, L. and B. Deagle (2020). “Eukaryote Plankton Assemblages in the Southern Kerguelen Axis Region: Ecological Drivers Differ between Size Fractions”. In: Deep-Sea Research Part II: Topical Studies in Oceanography 174. cited By 1, p. 104538. DOI: 10.1016/j.dsr2.2018.12.003.

Clerissi, C., L. Guillou, J. Escoubas, et al. (2020). “Unveiling Protist Diversity Associated with the Pacific Oyster Crassostrea Gigas Using Blocking and Excluding Primers”. In: BMC Microbiology 20.1. cited By 0. DOI: 10.1186/s12866-020-01860-1.

Cordier, T., L. Alonso-Sáez, L. Apothéloz-Perret-Gentil, et al. (2020). “Ecosystems Monitoring Powered by Environmental Genomics: A Review of Current Strategies with an Implementation Roadmap”. In: Molecular Ecology. cited By 10. DOI: 10.1111/mec.15472.

Cruaud, P., A. Vigneron, C. Dorea, et al. (2020). “Rapid Changes in Microbial Community Structures along a Meandering River”. In: Microorganisms 8.11. cited By 2, pp. 1-21. DOI: 10.3390/microorganisms8111631.

David, G., D. Moreira, G. Reboul, et al. (2020). “Environmental Drivers of Plankton Protist Communities along Latitudinal and Vertical Gradients in the Oldest and Deepest Freshwater Lake”. In: Environmental Microbiology. cited By 0. DOI: 10.1111/1462-2920.15346.

De La Iglesia, R., I. Echenique-Subiabre, S. Rodríguez-Marconi, et al. (2020). “Distinct Oxygen Environments Shape Picoeukaryote Assemblages Thriving Oxygen Minimum Zone Waters off Central Chile”. In: Journal of Plankton Research 42.5. cited By 0, pp. 514-529. DOI: 10.1093/plankt/fbaa036.

Delgado-Baquerizo, M., P. Reich, C. Trivedi, et al. (2020). “Multiple Elements of Soil Biodiversity Drive Ecosystem Functions across Biomes”. In: Nature Ecology and Evolution 4.2. cited By 36, pp. 210-220. DOI: 10.1038/s41559-019-1084-y.

Deng, L., D. Bölsterli, E. Kristensen, et al. (2020). “Macrofaunal Control of Microbial Community Structure in Continental Margin Sediments”. In: Proceedings of the National Academy of Sciences of the United States of America 117.27. cited By 3, pp. 15911-15922. DOI: 10.1073/pnas.1917494117.

Djemiel, C., D. Plassard, S. Terrat, et al. (2020). “Îœgreen-Db: A Reference Database for the 23S rRNA Gene of Eukaryotic Plastids and Cyanobacteria”. In: Scientific Reports 10.1. cited By 1. DOI: 10.1038/s41598-020-62555-1.

Duret, M., R. Lampitt, and P. Lam (2020). “Eukaryotic Influence on the Oceanic Biological Carbon Pump in the Scotia Sea as Revealed by 18S rRNA Gene Sequencing of Suspended and Sinking Particles”. In: Limnology and Oceanography 65.S1. cited By 3, pp. S49-S70. DOI: 10.1002/lno.11319.

Fawley, M. and K. Fawley (2020). “Identification of Eukaryotic Microalgal Strains”. In: Journal of Applied Phycology 32.5. cited By 2, pp. 2699-2709. DOI: 10.1007/s10811-020-02190-5.

Finkel, Z., Y. Liang, D. Nanjappa, et al. (2020). “A Ribosomal Sequence-Based Oil Sensitivity Index for Phytoplankton Groups”. In: Marine Pollution Bulletin 151. cited By 2. DOI: 10.1016/j.marpolbul.2019.110798.

Fiore-Donno, A., T. Richter-Heitmann, and M. Bonkowski (2020). “Contrasting Responses of Protistan Plant Parasites and Phagotrophs to Ecosystems, Land Management and Soil Properties”. In: Frontiers in Microbiology 11. cited By 4. DOI: 10.3389/fmicb.2020.01823.

Flegontova, O., P. Flegontov, P. Londoño, et al. (2020). “Environmental Determinants of the Distribution of Planktonic Diplonemids and Kinetoplastids in the Oceans”. In: Environmental Microbiology 22.9. cited By 1, pp. 4014-4031. DOI: 10.1111/1462-2920.15190.

Fu, Y., P. Zheng, X. Zhang, et al. (2020). “Protist Interactions and Seasonal Dynamics in the Coast of Yantai, Northern Yellow Sea of China as Revealed by Metabarcoding”. In: Journal of Ocean University of China 19.4. cited By 0, pp. 961-974. DOI: 10.1007/s11802-020-4461-x.

Gad, M., L. Hou, J. Li, et al. (2020). “Distinct Mechanisms Underlying the Assembly of Microeukaryotic Generalists and Specialists in an Anthropogenically Impacted River”. In: Science of the Total Environment 748. cited By 1. DOI: 10.1016/j.scitotenv.2020.141434.

Gaonkar, C., R. Piredda, D. Sarno, et al. (2020). “Species Detection and Delineation in the Marine Planktonic Diatoms Chaetoceros and Bacteriastrum through Metabarcoding: Making Biological Sense of Haplotype Diversity”. In: Environmental Microbiology 22.5. cited By 2, pp. 1917-1929. DOI: 10.1111/1462-2920.14984.

García-Gómez, C., L. Yebra, D. Cortés, et al. (2020). “Shifts in the Protist Community Associated with an Anticyclonic Gyre in the Alboran Sea (Mediterranean Sea)”. In: FEMS Microbiology Ecology 96.11. cited By 0. DOI: 10.1093/femsec/fiaa197.

Genitsaris, S., N. Stefanidou, M. Moustaka-Gouni, et al. (2020). “Variability and Community Composition of Marine Unicellular Eukaryote Assemblages in a Eutrophic Mediterranean Urban Coastal Area with Marked Plankton Blooms and Red Tides”. In: Diversity 12.3. cited By 0. DOI: 10.3390/d12030114.

Giner, C., M. Pernice, V. Balagué, et al. (2020). “Marked Changes in Diversity and Relative Activity of Picoeukaryotes with Depth in the World Ocean”. In: ISME Journal 14.2. cited By 16, pp. 437-449. DOI: 10.1038/s41396-019-0506-9.

Gu, R., P. Sun, Y. Wang, et al. (2020). “Genetic Diversity, Community Assembly, and Shaping Factors of Benthic Microbial Eukaryotes in Dongshan Bay, Southeast China”. In: Frontiers in Microbiology 11. cited By 0. DOI: 10.3389/fmicb.2020.592489.

Guo, X., L. Wu, and L. Huang (2020). “Spatiotemporal Patterns in Diversity and Assembly Process of Marine Protist Communities of the Changjiang (Yangtze River) Plume and Its Adjacent Waters”. In: Frontiers in Microbiology 11. cited By 0. DOI: 10.3389/fmicb.2020.579290.

Harakeh, S., E. Angelakis, T. Karamitros, et al. (2020). “Impact of Smoking Cessation, Coffee and Bread Consumption on the Intestinal Microbial Composition among Saudis: A Cross-Sectional Study”. In: PLoS ONE 15.4. cited By 0. DOI: 10.1371/journal.pone.0230895.

Harkes, P., J. van Steenbrugge, S. van den Elsen, et al. (2020). “Shifts in the Active Rhizobiome Paralleling Low Meloidogyne Chitwoodi Densities in Fields under Prolonged Organic Soil Management”. In: Frontiers in Plant Science 10. cited By 3. DOI: 10.3389/fpls.2019.01697.

Hernández-Ruiz, M., E. Barber-Lluch, A. Prieto, et al. (2020). “Response of Pico-Nano-Eukaryotes to Inorganic and Organic Nutrient Additions”. In: Estuarine, Coastal and Shelf Science 235. cited By 0. DOI: 10.1016/j.ecss.2019.106565.

Hervé, V. and P. Lopez (2020). “Analysis of Interdomain Taxonomic Patterns in Urban Street Mats”. In: Environmental Microbiology 22.4. cited By 0, pp. 1280-1293. DOI: 10.1111/1462-2920.14933.

Hirose, Y., T. Shiozaki, I. Hamano, et al. (2020). “A Specific Combination of Dual Index Adaptors Decreases the Sensitivity of Amplicon Sequencing with the Illumina Platform”. In: DNA Research 27.4. cited By 0. DOI: 10.1093/dnares/dsaa017.

Hirose, Y., T. Shiozaki, M. Otani, et al. (2020). “Investigating Algal Communities in Lacustrine and Hydro-Terrestrial Environments of East Antarctica Using Deep Amplicon Sequencing”. In: Microorganisms 8.4. cited By 1. DOI: 10.3390/microorganisms8040497.

Hupfauf, S., M. Etemadi, M. Juárez, et al. (2020). “CoMA – an Intuitive and User-Friendly Pipeline for Amplicon-Sequencing Data Analysis”. In: PLoS ONE 15 (12 December). cited By 2. DOI: 10.1371/journal.pone.0243241.

Irion, S., L. Jardillier, I. Sassenhagen, et al. (2020). “Marked Spatiotemporal Variations in Small Phytoplankton Structure in Contrasted Waters of the Southern Ocean (Kerguelen Area)”. In: Limnology and Oceanography 65.11. cited By 1, pp. 2835-2852. DOI: 10.1002/lno.11555.

Jauss, R., S. Walden, A. Fiore-Donno, et al. (2020). “From Forest Soil to the Canopy: Increased Habitat Diversity Does Not Increase Species Richness of Cercozoa and Oomycota in Tree Canopies”. In: Frontiers in Microbiology 11. cited By 1. DOI: 10.3389/fmicb.2020.592189.

Jiang, Y., L. Luan, K. Hu, et al. (2020). “Trophic Interactions as Determinants of the Arbuscular Mycorrhizal Fungal Community with Cascading Plant-Promoting Consequences”. In: Microbiome 8.1. cited By 0. DOI: 10.1186/s40168-020-00918-6.

Jin, S., K. Kim, M. Kim, et al. (2020). “An Assessment of the Taxonomic Reliability of Dna Barcode Sequences in Publicly Available Databases”. In: Algae 35.3. cited By 0, pp. 293-301. DOI: 10.4490/algae.2020.35.9.4.

Joglar, V., X. Álvarez-Salgado, A. Gago-Martinez, et al. (2020). “Cobalamin and Microbial Plankton Dynamics along a Coastal to Offshore Transect in the Eastern North Atlantic Ocean”. In: Environmental Microbiology. cited By 0. DOI: 10.1111/1462-2920.15367.

Joglar, V., A. Prieto, E. Barber-Lluch, et al. (2020). “Spatial and Temporal Variability in the Response of Phytoplankton and Prokaryotes to B-Vitamin Amendments in an Upwelling System”. In: Biogeosciences 17.10. cited By 2, pp. 2807-2823. DOI: 10.5194/bg-17-2807-2020.

Kase, L., A. Kraberg, K. Metfies, et al. (2020). “Rapid Succession Drives Spring Community Dynamics of Small Protists at Helgoland Roads, North Sea”. In: Journal of Plankton Research 42.3. cited By 1, pp. 305-319. DOI: 10.1093/plankt/fbaa017.

Keck, F., L. Millet, D. Debroas, et al. (2020). “Assessing the Response of Micro-Eukaryotic Diversity to the Great Acceleration Using Lake Sedimentary DNA”. In: Nature Communications 11.1. cited By 2. DOI: 10.1038/s41467-020-17682-8.

Klimek, B., M. Jaźwa, M. GoÅ‚Ä™biewski, et al. (2020). “No Apparent Effect of Invasive Alien Goldenrod on Soil Microbial Communities or Soil Fauna Feeding Activity”. In: Acta Oecologica 109. cited By 1. DOI: 10.1016/j.actao.2020.103669.

Kling, J., M. Lee, F. Fu, et al. (2020). “Transient Exposure to Novel High Temperatures Reshapes Coastal Phytoplankton Communities”. In: ISME Journal 14.2. cited By 5, pp. 413-424. DOI: 10.1038/s41396-019-0525-6.

Kolisko, M., O. Flegontova, A. Karnkowska, et al. (2020). “EukRef-Excavates: Seven Curated SSU Ribosomal RNA Gene Databases”. In: Database-the Magazine of Electronic Database Reviews 2020. cited By 0. DOI: 10.1093/database/baaa080.

Labarre, A., A. Obiol, S. Wilken, et al. (2020). “Expression of Genes Involved in Phagocytosis in Uncultured Heterotrophic Flagellates”. In: Limnology and Oceanography 65.S1. cited By 5, pp. S149-S160. DOI: 10.1002/lno.11379.

Leconte, J., L. Benites, T. Vannier, et al. (2020). “Genome Resolved Biogeography of Mamiellales”. In: Genes 11.1. cited By 0. DOI: 10.3390/genes11010066.

Li, F., F. Altermatt, J. Yang, et al. (2020). “Human Activities’ Fingerprint on Multitrophic Biodiversity and Ecosystem Functions across a Major River Catchment in China”. In: Global Change Biology 26.12. cited By 2, pp. 6867-6879. DOI: 10.1111/gcb.15357.

Li, Q., Y. Lei, R. Morard, et al. (2020). “Diversity Hotspot and Unique Community Structure of Foraminifera in the World’s Deepest Marine Blue Hole – Sansha Yongle Blue Hole”. In: Scientific Reports 10.1. cited By 1. DOI: 10.1038/s41598-020-67221-0.

Logares, R., I. Deutschmann, P. Junger, et al. (2020). “Disentangling the Mechanisms Shaping the Surface Ocean Microbiota”. In: Microbiome 8.1. cited By 19. DOI: 10.1186/s40168-020-00827-8.

Lohan, K., R. DiMaria, D. Martin, et al. (2020). “Diversity and Microhabitat Associations of Labyrinthula Spp. In the Indian River Lagoon System”. In: Diseases of Aquatic Organisms 137.2. cited By 1, pp. 145-157. DOI: 10.3354/dao03431.

Luan, L., Y. Jiang, M. Cheng, et al. (2020). “Organism Body Size Structures the Soil Microbial and Nematode Community Assembly at a Continental and Global Scale”. In: Nature Communications 11.1. cited By 1. DOI: 10.1038/s41467-020-20271-4.

Mars Brisbin, M., O. Brunner, M. Grossmann, et al. (2020). “Paired High-Throughput, in Situ Imaging and High-Throughput Sequencing Illuminate Acantharian Abundance and Vertical Distribution”. In: Limnology and Oceanography 65.12. cited By 0, pp. 2953-2965. DOI: 10.1002/lno.11567.

Mars Brisbin, M., A. Conover, and S. Mitarai (2020). “Influence of Regional Oceanography and Hydrothermal Activity on Protist Diversity and Community Structure in the Okinawa Trough”. In: Microbial Ecology 80.4. cited By 1, pp. 746-761. DOI: 10.1007/s00248-020-01583-w.

Martini, S., F. Larras, A. Boyé, et al. (2020). “Functional Trait-Based Approaches as a Common Framework for Aquatic Ecologists”. In: Limnology and Oceanography. cited By 0. DOI: 10.1002/lno.11655.

Metegnier, G., S. Paulino, P. Ramond, et al. (2020). “Species Specific Gene Expression Dynamics during Harmful Algal Blooms”. In: Scientific Reports 10.1. cited By 0. DOI: 10.1038/s41598-020-63326-8.

Michaud, C., V. Hervé, S. Dupont, et al. (2020). “Efficient but Occasionally Imperfect Vertical Transmission of Gut Mutualistic Protists in a Wood-Feeding Termite”. In: Molecular Ecology 29.2. cited By 4, pp. 308-324. DOI: 10.1111/mec.15322.

Minerovic, A., M. Potapova, C. Sales, et al. (2020). “18S-V9 DNA Metabarcoding Detects the Effect of Water-Quality Impairment on Stream Biofilm Eukaryotic Assemblages”. In: Ecological Indicators 113. cited By 4. DOI: 10.1016/j.ecolind.2020.106225.

Moccia, K., S. Papoulis, A. Willems, et al. (2020). “Using the Microbiome Amplification Preference Tool (MAPT) to Reveal Medicago Sativa-Associated Eukaryotic Microbes”. In: Phytobiomes Journal 4.4. cited By 0, pp. 340-350. DOI: 10.1094/PBIOMES-02-20-0022-R.

Mukherjee, I., M. Salcher, A. Andrei, et al. (2020). “A Freshwater Radiation of Diplonemids”. In: Environmental Microbiology 22.11. cited By 0, pp. 4658-4668. DOI: 10.1111/1462-2920.15209.

Nguyen, B., Q. Chen, J. He, et al. (2020). “Oxytetracycline and Ciprofloxacin Exposure Altered the Composition of Protistan Consumers in an Agricultural Soil”. In: Environmental Science and Technology 54.15. cited By 1, pp. 9556-9563. DOI: 10.1021/acs.est.0c02531.

Obiol, A., C. Giner, P. Sánchez, et al. (2020). “A Metagenomic Assessment of Microbial Eukaryotic Diversity in the Global Ocean”. In: Molecular Ecology Resources 20.3. cited By 10, pp. 718-731. DOI: 10.1111/1755-0998.13147.

Oliverio, A., S. Geisen, M. Delgado-Baquerizo, et al. (2020). “The Global-Scale Distributions of Soil Protists and Their Contributions to Belowground Systems”. In: Science Advances 6.4. cited By 24. DOI: 10.1126/sciadv.aax8787.

Pan, Y., J. Yang, G. McManus, et al. (2020). “Insights into Protist Diversity and Biogeography in Intertidal Sediments Sampled across a Range of Spatial Scales”. In: Limnology and Oceanography 65.5. cited By 6, pp. 1103-1115. DOI: 10.1002/lno.11375.

Pearman, J., L. Biessy, G. Thomson-Laing, et al. (2020). “Local Factors Drive Bacterial and Microeukaryotic Community Composition in Lake Surface Sediment Collected across an Altitudinal Gradient”. In: FEMS Microbiology Ecology 96.6. cited By 0. DOI: 10.1093/femsec/fiaa070.

Pinseel, E., S. Janssens, E. Verleyen, et al. (2020). “Global Radiation in a Rare Biosphere Soil Diatom”. In: Nature Communications 11.1. cited By 6. DOI: 10.1038/s41467-020-16181-0.

Piwosz, K., T. Shabarova, J. Pernthaler, et al. (2020). “Bacterial and Eukaryotic Small-Subunit Amplicon Data Do Not Provide a Quantitative Picture of Microbial Communities, but They Are Reliable in the Context of Ecological Interpretations”. In: mSphere 5.2. cited By 12. DOI: 10.1128/MSPHERE.00052-20.

Porter, T. and M. Hajibabaei (2020). “Putting COI Metabarcoding in Context: The Utility of Exact Sequence Variants (ESVs) in Biodiversity Analysis”. In: Frontiers in Ecology and Evolution 8. cited By 1. DOI: 10.3389/fevo.2020.00248.

Preston, C., C. Durkin, and K. Yamahara (2020). “DNA Metabarcoding Reveals Organisms Contributing to Particulate Matter Flux to Abyssal Depths in the North East Pacific Ocean”. In: Deep-Sea Research Part II: Topical Studies in Oceanography 173. cited By 6. DOI: 10.1016/j.dsr2.2019.104708.

Reczuga, M., C. Seppey, M. Mulot, et al. (2020). “Assessing the Responses of Sphagnum Micro-Eukaryotes to Climate Changes Using High Throughput Sequencing”. In: PeerJ 8. cited By 1. DOI: 10.7717/peerj.9821.

Reis, A. van der, A. Jeffs, and S. Lavery (2020). “From Feeding Habits to Food Webs: Exploring the Diet of an Opportunistic Benthic Generalist”. In: Marine Ecology Progress Series. cited By 0, pp. 107-121. DOI: 10.3354/meps13511.

Ribeiro, C., A. dos Santos, I. Probert, et al. (2020). “Taxonomic Reassignment of Pseudohaptolina Birgeri Comb. Nov. (Haptophyta)”. In: Phycologia 59.6. cited By 0, pp. 606-615. DOI: 10.1080/00318884.2020.1830255.

Rossmann, M., J. Pérez-Jaramillo, V. Kavamura, et al. (2020). “Multitrophic Interactions in the Rhizosphere Microbiome of Wheat: From Bacteria and Fungi to Protists”. In: FEMS Microbiology Ecology 96.4. cited By 11. DOI: 10.1093/femsec/fiaa032.

Rusiñol, M., S. Martínez-Puchol, N. Timoneda, et al. (2020). “Metagenomic Analysis of Viruses, Bacteria and Protozoa in Irrigation Water”. In: International Journal of Hygiene and Environmental Health 224. cited By 3. DOI: 10.1016/j.ijheh.2019.113440.

Sachs, M., R. Schluckebier, K. Poll, et al. (2020). “Evidence of Batrachochytrium Dendrobatidis and Other Amphibian Parasites in the Green Toad (Bufotes Viridis), Syntopic Amphibians and Environment in the Cologne Bay, Germany”. In: Salamandra 56.3. cited By 1, pp. 275-284.

Salmaso, N., A. Boscaini, and M. Pindo (2020). “Unraveling the Diversity of Eukaryotic Microplankton in a Large and Deep Perialpine Lake Using a High Throughput Sequencing Approach”. In: Frontiers in Microbiology 11. cited By 2. DOI: 10.3389/fmicb.2020.00789.

Santoferrara, L., F. Burki, S. Filker, et al. (2020). “Perspectives from Ten Years of Protist Studies by High-Throughput Metabarcoding”. In: Journal of Eukaryotic Microbiology 67.5. cited By 3, pp. 612-622. DOI: 10.1111/jeu.12813.

Santos, S., A. Schöler, T. Nielsen, et al. (2020). “Land Use as a Driver for Protist Community Structure in Soils under Agricultural Use across Europe”. In: Science of the Total Environment 717. cited By 1. DOI: 10.1016/j.scitotenv.2020.137228.

Sassenhagen, I., S. Irion, L. Jardillier, et al. (2020). “Protist Interactions and Community Structure during Early Autumn in the Kerguelen Region (Southern Ocean)”. In: Protist 171.1. cited By 4. DOI: 10.1016/j.protis.2019.125709.

Schoenle, A., M. Hohlfeld, M. Rosse, et al. (2020). “Global Comparison of Bicosoecid Cafeteria-like Flagellates from the Deep Ocean and Surface Waters, with Reorganization of the Family Cafeteriaceae”. In: European Journal of Protistology 73. cited By 3. DOI: 10.1016/j.ejop.2019.125665.

Seppey, C., O. Broennimann, A. Buri, et al. (2020). “Soil Protist Diversity in the Swiss Western Alps Is Better Predicted by Topo-Climatic than by Edaphic Variables”. In: Journal of Biogeography 47.4. cited By 3, pp. 866-878. DOI: 10.1111/jbi.13755.

Shi, J., Y. Lei, Q. Li, et al. (2020). “Molecular Diversity and Spatial Distribution of Benthic Foraminifera of the Seamounts and Adjacent Abyssal Plains in the Tropical Western Pacific Ocean”. In: Marine Micropaleontology 156. cited By 0. DOI: 10.1016/j.marmicro.2020.101850.

Simonin, M., C. Dasilva, V. Terzi, et al. (2020). “Influence of Plant Genotype and Soil on the Wheat Rhizosphere Microbiome: Evidences for a Core Microbiome across Eight African and European Soils”. In: FEMS Microbiology Ecology 96.6. cited By 8. DOI: 10.1093/femsec/fiaa067.

Sow, S., T. Trull, and L. Bodrossy (2020). “Oceanographic Fronts Shape Phaeocystis Assemblages: A High-Resolution 18S rRNA Gene Survey from the Ice-Edge to the Equator of the South Pacific”. In: Frontiers in Microbiology 11. cited By 1. DOI: 10.3389/fmicb.2020.01847.

Sprong, P., V. Fofonova, K. Wiltshire, et al. (2020). “Spatial Dynamics of Eukaryotic Microbial Communities in the German Bight”. In: Journal of Sea Research 163. cited By 2. DOI: 10.1016/j.seares.2020.101914.

Suleiman, A., K. Lourenço, C. Clark, et al. (2020). “From Toilet to Agriculture: Fertilization with Microalgal Biomass from Wastewater Impacts the Soil and Rhizosphere Active Microbiomes, Greenhouse Gas Emissions and Plant Growth”. In: Resources, Conservation and Recycling 161. cited By 2. DOI: 10.1016/j.resconrec.2020.104924.

Sun, P., Y. Wang, E. Laws, et al. (2020). “Water Mass–Driven Spatial Effects and Environmental Heterogeneity Shape Microeukaryote Biogeography in a Subtropical, Hydrographically Complex Ocean System - A Case Study of Ciliates”. In: Science of the Total Environment 706. cited By 7. DOI: 10.1016/j.scitotenv.2019.135753.

Sunagawa, S., S. Acinas, P. Bork, et al. (2020). “Tara Oceans: Towards Global Ocean Ecosystems Biology”. In: Nature Reviews Microbiology 18.8. cited By 5, pp. 428-445. DOI: 10.1038/s41579-020-0364-5.

Taerum, S., B. Steven, D. Gage, et al. (2020). “Validation of a PNA Clamping Method for Reducing Host DNA Amplification and Increasing Eukaryotic Diversity in Rhizosphere Microbiome Studies”. In: Phytobiomes Journal 4.4. cited By 0, pp. 291-302. DOI: 10.1094/PBIOMES-05-20-0040-TA.

Thompson, A., S. Geisen, and B. Adams (2020). “Shotgun Metagenomics Reveal a Diverse Assemblage of Protists in a Model Antarctic Soil Ecosystem”. In: Environmental Microbiology 22.11. cited By 0, pp. 4620-4632. DOI: 10.1111/1462-2920.15198.

Tian, H., J. Feng, L. Zhang, et al. (2020). “Ecological Drivers of Methanotrophic Communities in Paddy Soils around Mercury Mining Areas”. In: Science of the Total Environment 721. cited By 2. DOI: 10.1016/j.scitotenv.2020.137760.

Tkacz, A., E. Bestion, Z. Bo, et al. (2020). “Influence of Plant Fraction, Soil, and Plant Species on Microbiota: A Multikingdom Comparison”. In: mBio 11.1. cited By 19. DOI: 10.1128/mBio.02785-19.

Velasco-González, I., A. Sanchez-Jimenez, D. Singer, et al. (2020). “Rain-Fed Granite Rock Basins Accumulate a High Diversity of Dormant Microbial Eukaryotes”. In: Microbial Ecology 79.4. cited By 2, pp. 882-897. DOI: 10.1007/s00248-019-01463-y.

Wang, W., K. Ren, H. Chen, et al. (2020). “Seven-Year Dynamics of Testate Amoeba Communities Driven More by Stochastic than Deterministic Processes in Two Subtropical Reservoirs”. In: Water Research 185. cited By 1. DOI: 10.1016/j.watres.2020.116232.

Wang, X., J. Long, J. Li, et al. (2020). “Diversity of Soil Eukaryotic Microbes in Different Succession Stages in Maolan Karst Forest of Guizhou [贵州茂兰喀斯特森林不同演替下土壤真核微生物多样性]”. In: Huanjing Kexue/Environmental Science 41.9. cited By 0, pp. 4314-4321. DOI: 10.13227/j.hjkx.202001010.

Wang, Y., X. Hu, Y. Sun, et al. (2020). “Influence of the Cold Bottom Water on Taxonomic and Functional Composition and Complexity of Microbial Communities in the Southern Yellow Sea during the Summer”. In: Science of the Total Environment. cited By 0. DOI: 10.1016/j.scitotenv.2020.143496.

Wang, Y., G. Li, F. Shi, et al. (2020). “Taxonomic Diversity of Pico-/Nanoeukaryotes Is Related to Dissolved Oxygen and Productivity, but Functional Composition Is Shaped by Limiting Nutrients in Eutrophic Coastal Oceans”. In: Frontiers in Microbiology 11. cited By 0. DOI: 10.3389/fmicb.2020.601037.

Wang, Z., X. Gong, Y. Zheng, et al. (2020). “Soil Protist Communities in Burrowing and Casting Hotspots of Different Earthworm Species”. In: Soil Biology and Biochemistry 144. cited By 1. DOI: 10.1016/j.soilbio.2020.107774.

Wideman, J., A. Monier, R. Rodríguez-Martínez, et al. (2020). “Unexpected Mitochondrial Genome Diversity Revealed by Targeted Single-Cell Genomics of Heterotrophic Flagellated Protists”. In: Nature Microbiology 5.1. cited By 7, pp. 154-165. DOI: 10.1038/s41564-019-0605-4.

Xiong, W., Y. Song, K. Yang, et al. (2020). “Rhizosphere Protists Are Key Determinants of Plant Health”. In: Microbiome 8.1. cited By 14. DOI: 10.1186/s40168-020-00799-9.

Xu, D., H. Kong, E. Yang, et al. (2020). “Contrasting Community Composition of Active Microbial Eukaryotes in Melt Ponds and Sea Water of the Arctic Ocean Revealed by High Throughput Sequencing”. In: Frontiers in Microbiology 11. cited By 1. DOI: 10.3389/fmicb.2020.01170.

Xu, Z., Y. Li, Y. Lu, et al. (2020). “Impacts of the Zhe-Min Coastal Current on the Biogeographic Pattern of Microbial Eukaryotic Communities”. In: Progress in Oceanography 183. cited By 2. DOI: 10.1016/j.pocean.2020.102309.

Yeh, H., J. Questel, K. Maas, et al. (2020). “Metabarcoding Analysis of Regional Variation in Gut Contents of the Copepod Calanus Finmarchicus in the North Atlantic Ocean”. In: Deep-Sea Research Part II: Topical Studies in Oceanography 180. cited By 3. DOI: 10.1016/j.dsr2.2020.104738.

Zaiko, A., S. Wood, X. Pochon, et al. (2020). “Elucidating Biodiversity Shifts in Ballast Water Tanks during a Cross-Latitudinal Transfer: Complementary Insights from Molecular Analyses”. In: Environmental Science and Technology 54.13. cited By 0, pp. 8443-8454. DOI: 10.1021/acs.est.0c01931.

Zamora-Terol, S., A. Novotny, and M. Winder (2020). “Reconstructing Marine Plankton Food Web Interactions Using DNA Metabarcoding”. In: Molecular Ecology 29.17. cited By 2, pp. 3380-3395. DOI: 10.1111/mec.15555.

Zhao, F., S. Filker, K. Xu, et al. (2020). “Microeukaryote Communities Exhibit Phyla-Specific Distance-Decay Patterns and an Intimate Link between Seawater and Sediment Habitats in the Western Pacific Ocean”. In: Deep-Sea Research Part I: Oceanographic Research Papers 160. cited By 4. DOI: 10.1016/j.dsr.2020.103279.

Zhao, F., C. Wang, K. Xu, et al. (2020). “Diversity and Connectivity of Microeukaryote Communities across Multiple Habitats from Intertidal Zone to Deep-Sea Floor in the Western Pacific Ocean”. In: Deep-Sea Research Part I: Oceanographic Research Papers 165. cited By 1. DOI: 10.1016/j.dsr.2020.103395.

Zhao, Z., J. He, Z. Quan, et al. (2020). “Fertilization Changes Soil Microbiome Functioning, Especially Phagotrophic Protists”. In: Soil Biology and Biochemistry 148. cited By 2. DOI: 10.1016/j.soilbio.2020.107863.

2019

Ahmed, M., M. Back, T. Prior, et al. (2019). “Metabarcoding of Soil Nematodes: The Importance of Taxonomic Coverage and Availability of Reference Sequences in Choosing Suitable Marker(s)”. In: Metabarcoding and Metagenomics 3. cited By 4, pp. 37-99. DOI: 10.3897/mbmg.3.36408.

Angelakis, E., D. Bachar, M. Yasir, et al. (2019). “Treponema Species Enrich the Gut Microbiota of Traditional Rural Populations but Are Absent from Urban Individuals”. In: New Microbes and New Infections 27. cited By 17, pp. 14-21. DOI: 10.1016/j.nmni.2018.10.009.

Angelakis, E., D. Bachar, M. Yasir, et al. (2019). “Comparison of the Gut Microbiota of Obese Individuals from Different Geographic Origins”. In: New Microbes and New Infections 27. cited By 3, pp. 40-47. DOI: 10.1016/j.nmni.2018.11.005.

Angelova, A., G. Ellis, H. Wijesekera, et al. (2019). “Microbial Composition and Variability of Natural Marine Planktonic and Biofouling Communities from the Bay of Bengal”. In: Frontiers in Microbiology 10. cited By 1. DOI: 10.3389/fmicb.2019.02738.

Armeli Minicante, S., R. Piredda, G. Quero, et al. (2019). “Habitat Heterogeneity and Connectivity: Effects on the Planktonic Protist Community Structure at Two Adjacent Coastal Sites (the Lagoon and the Gulf of Venice, Northern Adriatic Sea, Italy) Revealed by Metabarcoding”. In: Frontiers in Microbiology 10. cited By 2. DOI: 10.3389/fmicb.2019.02736.

Belilla, J., D. Moreira, L. Jardillier, et al. (2019). “Hyperdiverse Archaea near Life Limits at the Polyextreme Geothermal Dallol Area”. In: Nature Ecology and Evolution 3.11. cited By 11, pp. 1552-1561. DOI: 10.1038/s41559-019-1005-0.

Boeuf, D., B. Edwards, J. Eppley, et al. (2019). “Biological Composition and Microbial Dynamics of Sinking Particulate Organic Matter at Abyssal Depths in the Oligotrophic Open Ocean”. In: Proceedings of the National Academy of Sciences of the United States of America 116.24. cited By 29, pp. 11824-11832. DOI: 10.1073/pnas.1903080116.

Boscaro, V., M. Syberg-Olsen, N. Irwin, et al. (2019). “What Can Environmental Sequences Tell Us about the Distribution of Low-Rank Taxa? The Case of Euplotes (Ciliophora, Spirotrichea), Including a Description of Euplotes Enigma Sp. Nov.” In: Journal of Eukaryotic Microbiology 66.2. cited By 8, pp. 281-293. DOI: 10.1111/jeu.12669.

Buccheri, M., E. Salvo, M. Coci, et al. (2019). “Investigating Microbial Indicators of Anthropogenic Marine Pollution by 16S and 18S High-Throughput Sequencing (HTS) Library Analysis”. In: FEMS Microbiology Letters 366.14. cited By 1. DOI: 10.1093/femsle/fnz179.

Caron, D. and S. Hu (2019). “Are We Overestimating Protistan Diversity in Nature?” In: Trends in Microbiology 27.3. cited By 20, pp. 197-205. DOI: 10.1016/j.tim.2018.10.009.

Chénard, C., W. Wijaya, D. Vaulot, et al. (2019). “Temporal and Spatial Dynamics of Bacteria, Archaea and Protists in Equatorial Coastal Waters”. In: Scientific Reports 9.1. cited By 4. DOI: 10.1038/s41598-019-52648-x.

Chambouvet, A., A. Monier, F. Maguire, et al. (2019). “Intracellular Infection of Diverse Diatoms by an Evolutionary Distinct Relative of the Fungi”. In: Current Biology 29.23. cited By 4, pp. 4093-4101.e4. DOI: 10.1016/j.cub.2019.09.074.

Cleary, D. (2019). “A Comparison of Microeukaryote Communities Inhabiting Sponges and Seawater in a Taiwanese Coral Reef System”. In: Annals of Microbiology 69.8. cited By 2, pp. 861-866. DOI: 10.1007/s13213-019-01476-5.

Cleary, D. and N. Gomes (2019). “Baseline Information on Prokaryotic and Microeukaryotic Plankton Communities inside and Outside of Indonesian Marine Lakes”. In: Journal of Sea Research 148-149. cited By 1, pp. 23-32. DOI: 10.1016/j.seares.2019.04.001.

Cordier, T., A. Lanzén, L. Apothéloz-Perret-Gentil, et al. (2019). “Embracing Environmental Genomics and Machine Learning for Routine Biomonitoring”. In: Trends in Microbiology 27.5. cited By 33, pp. 387-397. DOI: 10.1016/j.tim.2018.10.012.

Couton, M., T. Comtet, S. Le Cam, et al. (2019). “Metabarcoding on Planktonic Larval Stages: An Efficient Approach for Detecting and Investigating Life Cycle Dynamics of Benthic Aliens”. In: Management of Biological Invasions 10.4. cited By 6, pp. 657-689. DOI: 10.3391/mbi.2019.10.4.06.

Cruaud, P., A. Vigneron, M. Fradette, et al. (2019). “Annual Protist Community Dynamics in a Freshwater Ecosystem Undergoing Contrasted Climatic Conditions: The Saint-Charles River (Canada)”. In: Frontiers in Microbiology 10. cited By 6. DOI: 10.3389/fmicb.2019.02359.

Czech, L., P. Barbera, and A. Stamatakis (2019). “Methods for Automatic Reference Trees and Multilevel Phylogenetic Placement”. In: Bioinformatics 35.7. cited By 10, pp. 1151-1158. DOI: 10.1093/bioinformatics/bty767.

De Gruyter, J., J. Weedon, S. Bazot, et al. (2019). “Patterns of Local, Intercontinental and Interseasonal Variation of Soil Bacterial and Eukaryotic Microbial Communities”. In: FEMS Microbiology Ecology 96.3. cited By 4. DOI: 10.1093/femsec/fiaa018.

De Schepper, S., J. Ray, K. Skaar, et al. (2019). “The Potential of Sedimentary Ancient DNA for Reconstructing Past Sea Ice Evolution”. In: ISME Journal 13.10. cited By 7, pp. 2566-2577. DOI: 10.1038/s41396-019-0457-1.

Degrune, F., K. Dumack, A. Fiore-Donno, et al. (2019). “Distinct Communities of Cercozoa at Different Soil Depths in a Temperate Agricultural Field”. In: FEMS Microbiology Ecology 95.4. cited By 7. DOI: 10.1093/femsec/fiz041.

Del Campo, J., T. Heger, R. Rodríguez-Martínez, et al. (2019). “Assessing the Diversity and Distribution of Apicomplexans in Host and Free-Living Environments Using High-Throughput Amplicon Data and a Phylogenetically Informed Reference Framework”. In: Frontiers in Microbiology 10 (OCT). cited By 7. DOI: 10.3389/fmicb.2019.02373.

Demory, D., A. Baudoux, A. Monier, et al. (2019). “Picoeukaryotes of the Micromonas Genus: Sentinels of a Warming Ocean”. In: ISME Journal 13.1. cited By 11, pp. 132-146. DOI: 10.1038/s41396-018-0248-0.

Duarte, L., F. Coelho, D. Cleary, et al. (2019). “Bacterial and Microeukaryotic Plankton Communities in a Semi-Intensive Aquaculture System of Sea Bass (Dicentrarchus Labrax): A Seasonal Survey”. In: Aquaculture 503. cited By 7, pp. 59-69. DOI: 10.1016/j.aquaculture.2018.12.066.

Dufresne, Y., F. Lejzerowicz, L. Perret-Gentil, et al. (2019). “SLIM: A Flexible Web Application for the Reproducible Processing of Environmental DNA Metabarcoding Data”. In: BMC Bioinformatics 20.1. cited By 21. DOI: 10.1186/s12859-019-2663-2.

Faure, E., F. Not, A. Benoiston, et al. (2019). “Mixotrophic Protists Display Contrasted Biogeographies in the Global Ocean”. In: ISME Journal 13.4. cited By 12, pp. 1072-1083. DOI: 10.1038/s41396-018-0340-5.

Fiore-Donno, A., T. Richter-Heitmann, F. Degrune, et al. (2019). “Functional Traits and Spatio-Temporal Structure of a Major Group of Soil Protists (Rhizaria: Cercozoa) in a Temperate Grassland”. In: Frontiers in Microbiology 10 (JUN). cited By 18. DOI: 10.3389/fmicb.2019.01332.

Forster, D., S. Filker, R. Kochems, et al. (2019). “A Comparison of Different Ciliate Metabarcode Genes as Bioindicators for Environmental Impact Assessments of Salmon Aquaculture”. In: Journal of Eukaryotic Microbiology 66.2. cited By 13, pp. 294-308. DOI: 10.1111/jeu.12670.

Gómez-Consarnau, L., D. Needham, P. Weber, et al. (2019). “Influence of Light on Particulate Organic Matter Utilization by Attached and Free-Living Marine Bacteria”. In: Frontiers in Microbiology 10 (JUN). cited By 7. DOI: 10.3389/fmicb.2019.01204.

Gao, Y., Y. Chen, W. Xiong, et al. (2019). “Distribution Patterns of Dinoflagellate Communities along the Songhua River”. In: PeerJ 2019.4. cited By 1. DOI: 10.7717/peerj.6733.

Geisen, S., M. Briones, H. Gan, et al. (2019). “A Methodological Framework to Embrace Soil Biodiversity”. In: Soil Biology and Biochemistry 136. cited By 17. DOI: 10.1016/j.soilbio.2019.107536.

Giner, C., V. Balagué, A. Krabberød, et al. (2019). “Quantifying Long-Term Recurrence in Planktonic Microbial Eukaryotes”. In: Molecular Ecology 28.5. cited By 21, pp. 923-935. DOI: 10.1111/mec.14929.

GoÅ‚Ä™biewski, M., A. Tarasek, M. Sikora, et al. (2019). “Rapid Microbial Community Changes during Initial Stages of Pine Litter Decomposition”. In: Microbial Ecology 77.1. cited By 9, pp. 56-75. DOI: 10.1007/s00248-018-1209-x.

Gran-Stadniczeñko, S., E. Egge, V. Hostyeva, et al. (2019). “Protist Diversity and Seasonal Dynamics in Skagerrak Plankton Communities as Revealed by Metabarcoding and Microscopy”. In: Journal of Eukaryotic Microbiology 66.3. cited By 13, pp. 494-513. DOI: 10.1111/jeu.12700.

Gutierrez-Rodriguez, A., M. Stukel, A. Lopes dos Santos, et al. (2019). “High Contribution of Rhizaria (Radiolaria) to Vertical Export in the California Current Ecosystem Revealed by DNA Metabarcoding”. In: ISME Journal 13.4. cited By 14, pp. 964-976. DOI: 10.1038/s41396-018-0322-7.

Haas, S., D. Desai, J. LaRoche, et al. (2019). “Geomicrobiology of the Carbon, Nitrogen and Sulphur Cycles in Powell Lake: A Permanently Stratified Water Column Containing Ancient Seawater”. In: Environmental Microbiology 21.10. cited By 0, pp. 3927-3952. DOI: 10.1111/1462-2920.14743.

Harkes, P., A. Suleiman, S. van den Elsen, et al. (2019). “Conventional and Organic Soil Management as Divergent Drivers of Resident and Active Fractions of Major Soil Food Web Constituents”. In: Scientific Reports 9.1. cited By 7. DOI: 10.1038/s41598-019-49854-y.

He, X., T. Sutherland, J. Pawlowski, et al. (2019). “Responses of Foraminifera Communities to Aquaculture-Derived Organic Enrichment as Revealed by Environmental DNA Metabarcoding”. In: Molecular Ecology 28.5. cited By 5, pp. 1138-1153. DOI: 10.1111/mec.15007.

Isabwe, A., K. Ren, Y. Wang, et al. (2019). “Community Assembly Mechanisms Underlying the Core and Random Bacterioplankton and Microeukaryotes in a River-Reservoir System”. In: Water (Switzerland) 11.6. cited By 10. DOI: 10.3390/w11061127.

Kataoka, T. and R. Kondo (2019a). “Data on Taxonomic Annotation and Diversity of 18S rRNA Gene Amplicon Libraries Derived from High Throughput Sequencing”. In: Data in Brief 25. cited By 1. DOI: 10.1016/j.dib.2019.104213.

Kataoka, T. and R. Kondo (2019b). “Protistan Community Composition in Anoxic Sediments from Three Salinity-Disparate Japanese Lakes”. In: Estuarine, Coastal and Shelf Science 224. cited By 1, pp. 34-42. DOI: 10.1016/j.ecss.2019.04.046.

Kong, J., Y. Wang, A. Warren, et al. (2019). “Diversity Distribution and Assembly Mechanisms of Planktonic and Benthic Microeukaryote Communities in Intertidal Zones of Southeast Fujian, China”. In: Frontiers in Microbiology 10. cited By 4. DOI: 10.3389/fmicb.2019.02640.

Kulk, G., A. Buist, W. van de Poll, et al. (2019). “Size Scaling of Photophysiology and Growth in Four Freshly Isolated Diatom Species from Ryder Bay, Western Antarctic Peninsula”. In: Journal of Phycology 55.2. cited By 2, pp. 314-328. DOI: 10.1111/jpy.12813.

Lambert, S., M. Tragin, J. Lozano, et al. (2019). “Rhythmicity of Coastal Marine Picoeukaryotes, Bacteria and Archaea despite Irregular Environmental Perturbations”. In: ISME Journal 13.2. cited By 18, pp. 388-401. DOI: 10.1038/s41396-018-0281-z.

Lentendu, G., P. Buosi, A. Cabral, et al. (2019). “Protist Biodiversity and Biogeography in Lakes from Four Brazilian River–Floodplain Systems”. In: Journal of Eukaryotic Microbiology 66.4. cited By 3, pp. 592-599. DOI: 10.1111/jeu.12703.

Leray, M., N. Knowlton, S. Ho, et al. (2019). “GenBank Is a Reliable Resource for 21st Century Biodiversity Research”. In: Proceedings of the National Academy of Sciences of the United States of America 116.45. cited By 31, pp. 22651-22656. DOI: 10.1073/pnas.1911714116.

Li, F., X. Zhang, Y. Xie, et al. (2019). “Sedimentary DNA Reveals over 150 Years of Ecosystem Change by Human Activities in Lake Chao, China”. In: Environment International 133. cited By 9. DOI: 10.1016/j.envint.2019.105214.

Liu, F., X. Zhang, S. Tang, et al. (2019). “Effects of Acid Mine Drainage on Eukaryotic Community in River Sediments [酸性矿山废水对沉积物真核微生物群落的影响]”. In: Zhongguo Huanjing Kexue/China Environmental Science 39.12. cited By 0, pp. 5285-5292.

Liu, L., H. Chen, M. Liu, et al. (2019). “Response of the Eukaryotic Plankton Community to the Cyanobacterial Biomass Cycle over 6 Years in Two Subtropical Reservoirs”. In: ISME Journal 13.9. cited By 38, pp. 2196-2208. DOI: 10.1038/s41396-019-0417-9.

Liu, M., Y. Xue, and J. Yang (2019). “Rare Plankton Subcommunities Are Far More Affected by DNA Extraction Kits than Abundant Plankton”. In: Frontiers in Microbiology 10 (MAR). cited By 11. DOI: 10.3389/fmicb.2019.00454.

Lupatini, M., G. Korthals, L. Roesch, et al. (2019). “Long-Term Farming Systems Modulate Multi-Trophic Responses”. In: Science of the Total Environment 646. cited By 9, pp. 480-490. DOI: 10.1016/j.scitotenv.2018.07.323.

Lutz, S., L. Procházková, L. Benning, et al. (2019). “Evaluating Amplicon High–Throughput Sequencing Data of Microalgae Living in Melting Snow: Improvements and Limitations”. In: Fottea 19.2. cited By 5, pp. 115-131. DOI: 10.5507/fot.2019.003.

Macingo, S., K. Kormas, A. Oikonomou, et al. (2019). “Taxa-Area and Distance-Decay Relationships of Unicellular Eukaryotes along an Elevation Gradient of Mountainous Freshwater Ecosystems”. In: Journal of Plankton Research 41.6. cited By 0, pp. 821-834. DOI: 10.1093/plankt/fbz066.

Marquardt, M., R. Skogseth, I. Wiedmann, et al. (2019). “Vertical Export of Marine Pelagic Protists in an Ice-Free High-Arctic Fjord (Adventfjorden, West Spitsbergen) throughout 2011−2012”. In: Aquatic Microbial Ecology 83.1. cited By 1, pp. 65-82. DOI: 10.3354/ame01904.

Metz, S., A. Dos Santos, M. Berman, et al. (2019). “Diversity of Photosynthetic Picoeukaryotes in Eutrophic Shallow Lakes as Assessed by Combining Flow Cytometry Cell-Sorting and High Throughput Sequencing”. In: FEMS Microbiology Ecology 95.5. cited By 3. DOI: 10.1093/femsec/fiz038.

Metz, S., D. Singer, I. Domaizon, et al. (2019). “Global Distribution of Trebouxiophyceae Diversity Explored by High-Throughput Sequencing and Phylogenetic Approaches”. In: Environmental Microbiology 21.10. cited By 3, pp. 3885-3895. DOI: 10.1111/1462-2920.14738.

Moore, L., T. Huang, M. Ostrowski, et al. (2019). “Unicellular Cyanobacteria Are Important Components of Phytoplankton Communities in Australia’s Northern Oceanic Ecoregions”. In: Frontiers in Microbiology 10 (JAN). cited By 0. DOI: 10.3389/fmicb.2018.03356.

Mukherjee, I., Y. Hodoki, Y. Okazaki, et al. (2019). “Widespread Dominance of Kinetoplastids and Unexpected Presence of Diplonemids in Deep Freshwater Lakes”. In: Frontiers in Microbiology 10. cited By 4. DOI: 10.3389/fmicb.2019.02375.

Murdock, S. and S. Juniper (2019). “Hydrothermal Vent Protistan Distribution along the Mariana Arc Suggests Vent Endemics May Be Rare and Novel”. In: Environmental Microbiology 21.10. cited By 5, pp. 3796-3815. DOI: 10.1111/1462-2920.14729.

Nagler, M., K. Kozjek, M. Etemadi, et al. (2019). “Simple yet Effective: Microbial and Biotechnological Benefits of Rumen Liquid Addition to Lignocellulose-Degrading Biogas Plants”. In: Journal of Biotechnology 300. cited By 7, pp. 1-10. DOI: 10.1016/j.jbiotec.2019.05.004.

Panagiota-Chronopoulou, M., I. Salonen, C. Bird, et al. (2019). “Metabarcoding Insights into the Trophic Behavior and Identity of Intertidal Benthic Foraminifera”. In: Frontiers in Microbiology 10 (MAY). cited By 7. DOI: 10.3389/fmicb.2019.01169.

Pasulka, A., S. Hu, P. Countway, et al. (2019). “SSU-rRNA Gene Sequencing Survey of Benthic Microbial Eukaryotes from Guaymas Basin Hydrothermal Vent”. In: Journal of Eukaryotic Microbiology 66.4. cited By 6, pp. 637-653. DOI: 10.1111/jeu.12711.

Piwosz, K. (2019). “Weekly Dynamics of Abundance and Size Structure of Specific Nanophytoplankton Lineages in Coastal Waters (Baltic Sea)”. In: Limnology and Oceanography 64.5. cited By 4, pp. 2172-2186. DOI: 10.1002/lno.11177.

Polinski, J., J. Bucci, M. Gasser, et al. (2019). “Metabarcoding Assessment of Prokaryotic and Eukaryotic Taxa in Sediments from Stellwagen Bank National Marine Sanctuary”. In: Scientific Reports 9.1. cited By 2. DOI: 10.1038/s41598-019-51341-3.

Ramond, P., M. Sourisseau, N. Simon, et al. (2019). “Coupling between Taxonomic and Functional Diversity in Protistan Coastal Communities”. In: Environmental Microbiology 21.2. cited By 10, pp. 730-749. DOI: 10.1111/1462-2920.14537.

Reboul, G., D. Moreira, P. Bertolino, et al. (2019). “Microbial Eukaryotes in the Suboxic Chemosynthetic Ecosystem of Movile Cave, Romania”. In: Environmental Microbiology Reports 11.3. cited By 1, pp. 464-473. DOI: 10.1111/1758-2229.12756.

Rey, A., K. Carney, L. Quinones, et al. (2019). “Environmental DNA Metabarcoding: A Promising Tool for Ballast Water Monitoring”. In: Environmental Science and Technology 53.20. cited By 5, pp. 11849-11859. DOI: 10.1021/acs.est.9b01855.

Ribeiro, H., A. Martins, M. Gonçalves, et al. (2019). “Development of an Autonomous Biosampler to Capture in Situ Aquatic Microbiomes”. In: PLoS ONE 14.5. cited By 1. DOI: 10.1371/journal.pone.0216882.

Rimet, F., E. Gusev, M. Kahlert, et al. (2019). “Diat.Barcode, an Open-Access Curated Barcode Library for Diatoms”. In: Scientific Reports 9.1. cited By 21. DOI: 10.1038/s41598-019-51500-6.

Rudolph, K., C. Fichtel, D. Schneider, et al. (2019). “One Size Fits All? Relationships among Group Size, Health, and Ecology Indicate a Lack of an Optimal Group Size in a Wild Lemur Population”. In: Behavioral Ecology and Sociobiology 73.9. cited By 3. DOI: 10.1007/s00265-019-2746-0.

Santoferrara, L. (2019). “Current Practice in Plankton Metabarcoding: Optimization and Error Management”. In: Journal of Plankton Research 41.5. cited By 7, pp. 571-582. DOI: 10.1093/plankt/fbz041.

Shiozaki, T., Y. Hirose, K. Hamasaki, et al. (2019). “Eukaryotic Phytoplankton Contributing to a Seasonal Bloom and Carbon Export Revealed by Tracking Sequence Variants in the Western North Pacific”. In: Frontiers in Microbiology 10. cited By 3. DOI: 10.3389/fmicb.2019.02722.

Singer, D., S. Metz, F. Unrein, et al. (2019). “Contrasted Micro-Eukaryotic Diversity Associated with Sphagnum Mosses in Tropical, Subtropical and Temperate Climatic Zones”. In: Microbial Ecology 78.3. cited By 5, pp. 714-724. DOI: 10.1007/s00248-019-01325-7.

Sousa, A. de, M. Tomasino, P. Duarte, et al. (2019). “Diversity and Composition of Pelagic Prokaryotic and Protist Communities in a Thin Arctic Sea-Ice Regime”. In: Microbial Ecology 78.2. cited By 5, pp. 388-408. DOI: 10.1007/s00248-018-01314-2.

Suleiman, A., P. Harkes, S. van den Elsen, et al. (2019). “Organic Amendment Strengthens Interkingdom Associations in the Soil and Rhizosphere of Barley (Hordeum Vulgare)”. In: Science of the Total Environment 695. cited By 4. DOI: 10.1016/j.scitotenv.2019.133885.

Sun, P., L. Huang, D. Xu, et al. (2019). “Integrated Space-Time Dataset Reveals High Diversity and Distinct Community Structure of Ciliates in Mesopelagic Waters of the Northern South China Sea”. In: Frontiers in Microbiology 10. cited By 5. DOI: 10.3389/fmicb.2019.02178.

Swalethorp, R., J. Dinasquet, R. Logares, et al. (2019). “Microzooplankton Distribution in the Amundsen Sea Polynya (Antarctica) during an Extensive Phaeocystis Antarctica Bloom”. In: Progress in Oceanography 170. cited By 4, pp. 1-10. DOI: 10.1016/j.pocean.2018.10.008.

Tito, R., S. Chaffron, C. Caenepeel, et al. (2019). “Population-Level Analysis of Blastocystis Subtype Prevalence and Variation in the Human Gut Microbiota”. In: Gut 68.7. cited By 27, pp. 1180-1189. DOI: 10.1136/gutjnl-2018-316106.

Tragin, M. and D. Vaulot (2019). “Novel Diversity within Marine Mamiellophyceae (Chlorophyta) Unveiled by Metabarcoding”. In: Scientific Reports 9.1. cited By 17. DOI: 10.1038/s41598-019-41680-6.

Tsao, H., U. Scheikl, C. Herbold, et al. (2019). “The Cooling Tower Water Microbiota: Seasonal Dynamics and Co-Occurrence of Bacterial and Protist Phylotypes”. In: Water Research 159. cited By 15, pp. 464-479. DOI: 10.1016/j.watres.2019.04.028.

Voss, C., A. Fiore-Donno, M. Guerreiro, et al. (2019). “Metatranscriptomics Reveals Unsuspected Protistan Diversity in Leaf Litter across Temperate Beech Forests, with Amoebozoa the Dominating Lineage”. In: FEMS Microbiology Ecology 95.10. cited By 5. DOI: 10.1093/femsec/fiz142.

Whalen, K., J. Becker, A. Schrecengost, et al. (2019). “Bacterial Alkylquinolone Signaling Contributes to Structuring Microbial Communities in the Ocean”. In: Microbiome 7.1. cited By 5. DOI: 10.1186/s40168-019-0711-9.

Wilschut, R., S. Geisen, H. Martens, et al. (2019). “Latitudinal Variation in Soil Nematode Communities under Climate Warming-Related Range-Expanding and Native Plants”. In: Global Change Biology 25.8. cited By 13, pp. 2714-2726. DOI: 10.1111/gcb.14657.

Wilschut, R., W. van der Putten, P. Garbeva, et al. (2019). “Root Traits and Belowground Herbivores Relate to Plant–Soil Feedback Variation among Congeners”. In: Nature Communications 10.1. cited By 21. DOI: 10.1038/s41467-019-09615-x.

Wood, S., X. Pochon, O. Laroche, et al. (2019). “A Comparison of Droplet Digital Polymerase Chain Reaction (PCR), Quantitative PCR and Metabarcoding for Species-Specific Detection in Environmental DNA”. In: Molecular Ecology Resources 19.6. cited By 18, pp. 1407-1419. DOI: 10.1111/1755-0998.13055.

Wu, W., C. Guo, P. Pitta, et al. (2019). “Response of Active Picoeukaryotes to the Deposition of Saharan Dust and European Aerosols in the Eastern Mediterranean Sea”. In: Aquatic Microbial Ecology 82.1. cited By 0, pp. 31-42. DOI: 10.3354/ame01881.

Wu, W. and B. Huang (2019). “Protist Diversity and Community Assembly in Surface Sediments of the South China Sea”. In: MicrobiologyOpen 8.10. cited By 5. DOI: 10.1002/mbo3.891.

Yu, Z. and N. Chen (2019). “Emerging Trends in Red Tide and Major Research Progresses [国内外赤潮的发展趋势与研究热点]”. In: Oceanologia et Limnologia Sinica 50.3. cited By 3, pp. 474-486. DOI: 10.11693/hyhz20190200041.

Zhao, Z., J. He, S. Geisen, et al. (2019). “Protist Communities Are More Sensitive to Nitrogen Fertilization than Other Microorganisms in Diverse Agricultural Soils”. In: Microbiome 7.1. cited By 44. DOI: 10.1186/s40168-019-0647-0.

2018

Ali, S., M. Isa, S. Safari, et al. (2018). “Eukaryotic Biodiversity in Mixed Peat Ecosystems in Sarawak, Malaysia”. In: Journal of Oil Palm Research 30.3. cited By 1, pp. 429-450. DOI: 10.21894/jopr.2018.0023.

Ammon, U. von, S. Wood, O. Laroche, et al. (2018). “The Impact of Artificial Surfaces on Marine Bacterial and Eukaryotic Biofouling Assemblages: A High-Throughput Sequencing Analysis”. In: Marine Environmental Research 133. cited By 21, pp. 57-66. DOI: 10.1016/j.marenvres.2017.12.003.

Ammon, U., S. Wood, O. Laroche, et al. (2018). “Combining Morpho-Taxonomy and Metabarcoding Enhances the Detection of Non-Indigenous Marine Pests in Biofouling Communities”. In: Scientific Reports 8.1. cited By 16. DOI: 10.1038/s41598-018-34541-1.

Araujo, A. de, L. Mendes, L. Lemos, et al. (2018). “Protist Species Richness and Soil Microbiome Complexity Increase towards Climax Vegetation in the Brazilian Cerrado”. In: Communications Biology 1.1. cited By 13. DOI: 10.1038/s42003-018-0129-0.

Arroyo, A., D. López-Escardó, E. Kim, et al. (2018). “Novel Diversity of Deeply Branching Holomycota and Unicellular Holozoans Revealed by Metabarcoding in Middle Paraná River, Argentina”. In: Frontiers in Ecology and Evolution 6 (JUL). cited By 5. DOI: 10.3389/fevo.2018.00099.

Bahram, M., F. Hildebrand, S. Forslund, et al. (2018). “Structure and Function of the Global Topsoil Microbiome”. In: Nature 560.7717. cited By 323, pp. 233-237. DOI: 10.1038/s41586-018-0386-6.

Balzano, S., J. Lattaud, L. Villanueva, et al. (2018). “A Quest for the Biological Sources of Long Chain Alkyl Diols in the Western Tropical North Atlantic Ocean”. In: Biogeosciences 15.19. cited By 11, pp. 5951-5968. DOI: 10.5194/bg-15-5951-2018.

Bass, D., L. Czech, B. Williams, et al. (2018). “Clarifying the Relationships between Microsporidia and Cryptomycota”. In: Journal of Eukaryotic Microbiology 65.6. cited By 41, pp. 773-782. DOI: 10.1111/jeu.12519.

Bensaoud, C., M. Nishiyama, C. Ben Hamda, et al. (2018). “De Novo Assembly and Annotation of Hyalomma Dromedarii Tick (Acari: Ixodidae) Sialotranscriptome with Regard to Gender Differences in Gene Expression”. In: Parasites and Vectors 11.1. cited By 10. DOI: 10.1186/s13071-018-2874-9.

Berdjeb, L., A. Parada, D. Needham, et al. (2018). “Short-Term Dynamics and Interactions of Marine Protist Communities during the Spring-Summer Transition”. In: ISME Journal 12.8. cited By 21, pp. 1907-1917. DOI: 10.1038/s41396-018-0097-x.

Boast, A., L. Weyrich, J. Wood, et al. (2018). “Coprolites Reveal Ecological Interactions Lost with the Extinction of New Zealand Birds”. In: Proceedings of the National Academy of Sciences of the United States of America 115.7. cited By 20, pp. 1546-1551. DOI: 10.1073/pnas.1712337115.

Boaventura, C., F. Coelho, P. Martins, et al. (2018). “Micro-Eukaryotic Plankton Diversity in an Intensive Aquaculture System for Production of Scophthalmus Maximus and Solea Senegalensis”. In: Aquaculture 490. cited By 5, pp. 321-328. DOI: 10.1016/j.aquaculture.2018.02.033.

Bock, C., M. Salcher, M. Jensen, et al. (2018). “Synchrony of Eukaryotic and Prokaryotic Planktonic Communities in Three Seasonally Sampled Austrian Lakes”. In: Frontiers in Microbiology 9 (JUN). cited By 11. DOI: 10.3389/fmicb.2018.01290.

Boscaro, V., L. Santoferrara, Q. Zhang, et al. (2018). “EukRef-Ciliophora: A Manually Curated, Phylogeny-Based Database of Small Subunit rRNA Gene Sequences of Ciliates”. In: Environmental Microbiology 20.6. cited By 11, pp. 2218-2230. DOI: 10.1111/1462-2920.14264.

Briand, J., X. Pochon, S. Wood, et al. (2018). “Metabarcoding and Metabolomics Offer Complementarity in Deciphering Marine Eukaryotic Biofouling Community Shifts”. In: Biofouling 34.6. cited By 8, pp. 657-672. DOI: 10.1080/08927014.2018.1480757.

Brown, M., J. Van De Kamp, M. Ostrowski, et al. (2018). “Data Descriptor: Systematic, Continental Scale Temporal Monitoring of Marine Pelagic Microbiota by the Australian Marine Microbial Biodiversity Initiative”. In: Scientific Data 5. cited By 18. DOI: 10.1038/sdata.2018.130.

Bruce Cahoon, A., A. Huffman, M. Krager, et al. (2018). “A Meta-Barcoding Census of Freshwater Planktonic Protists in Appalachia - Natural Tunnel State Park, Virginia, USA”. In: Metabarcoding and Metagenomics 2. cited By 3. DOI: 10.3897/mbmg.2.26939.

Cai, J., C. Bai, X. Tang, et al. (2018). “Characterization of Bacterial and Microbial Eukaryotic Communities Associated with an Ephemeral Hypoxia Event in Taihu Lake, a Shallow Eutrophic Chinese Lake”. In: Environmental Science and Pollution Research 25.31. cited By 7, pp. 31543-31557. DOI: 10.1007/s11356-018-2987-x.

Campo, J. del, M. Kolisko, V. Boscaro, et al. (2018). “EukRef: Phylogenetic Curation of Ribosomal RNA to Enhance Understanding of Eukaryotic Diversity and Distribution”. In: PLoS Biology 16.9. cited By 32. DOI: 10.1371/journal.pbio.2005849.

Celussi, M., G. Quero, L. Zoccarato, et al. (2018). “Planktonic Prokaryote and Protist Communities in a Submarine Canyon System in the Ligurian Sea (NW Mediterranean)”. In: Progress in Oceanography 168. cited By 8, pp. 210-221. DOI: 10.1016/j.pocean.2018.10.002.

Clerissi, C., S. Brunet, J. Vidal-Dupiol, et al. (2018). “Protists within Corals: The Hidden Diversity”. In: Frontiers in Microbiology 9 (AUG). cited By 9. DOI: 10.3389/fmicb.2018.02043.

Decelle, J., Q. Carradec, X. Pochon, et al. (2018). “Worldwide Occurrence and Activity of the Reef-Building Coral Symbiont Symbiodinium in the Open Ocean”. In: Current Biology 28.22. cited By 17, pp. 3625-3633.e3. DOI: 10.1016/j.cub.2018.09.024.

Douglas, G., A. Comeau, and M. Langille (2018). “Processing a 16S rRNA Sequencing Dataset with the Microbiome Helper Workflow”. In: Methods in Molecular Biology 1849. cited By 2, pp. 131-141. DOI: 10.1007/978-1-4939-8728-3_9.

Duarte, S., L. Nunes, P. Borges, et al. (2018). “A Bridge Too Far? An Integrative Framework Linking Classical Protist Taxonomy and Metabarcoding in Lower Termites”. In: Frontiers in Microbiology 9 (NOV). cited By 3. DOI: 10.3389/fmicb.2018.02620.

Enberg, S., M. Majaneva, R. Autio, et al. (2018). “Phases of Microalgal Succession in Sea Ice and the Water Column in the Baltic Sea from Autumn to Spring”. In: Marine Ecology Progress Series 599. cited By 5, pp. 19-34. DOI: 10.3354/meps12645.

Engesmo, A., D. Strand, S. Gran-Stadniczeñko, et al. (2018). “Development of a qPCR Assay to Detect and Quantify Ichthyotoxic Flagellates along the Norwegian Coast, and the First Norwegian Record of Fibrocapsa Japonica (Raphidophyceae)”. In: Harmful Algae 75. cited By 7, pp. 105-117. DOI: 10.1016/j.hal.2018.04.007.

Fiore-Donno, A., C. Rixen, M. Rippin, et al. (2018). “New Barcoded Primers for Efficient Retrieval of Cercozoan Sequences in High-Throughput Environmental Diversity Surveys, with Emphasis on Worldwide Biological Soil Crusts”. In: Molecular Ecology Resources 18.2. cited By 23, pp. 229-239. DOI: 10.1111/1755-0998.12729.

Flegontova, O., P. Flegontov, S. Malviya, et al. (2018). “Neobodonids Are Dominant Kinetoplastids in the Global Ocean”. In: Environmental Microbiology 20.2. cited By 12, pp. 878-889. DOI: 10.1111/1462-2920.14034.

Gérikas Ribeiro, C., A. Dos Santos, D. Marie, et al. (2018). “Small Eukaryotic Phytoplankton Communities in Tropical Waters off Brazil Are Dominated by Symbioses between Haptophyta and Nitrogen-Fixing Cyanobacteria”. In: ISME Journal 12.5. cited By 11, pp. 1360-1374. DOI: 10.1038/s41396-018-0050-z.

Gaonkar, C., R. Piredda, C. Minucci, et al. (2018). “Annotated 18S and 28S rDNA Reference Sequences of Taxa in the Planktonic Diatom Family Chaetocerotaceae”. In: PLoS ONE 13.12. cited By 9. DOI: 10.1371/journal.pone.0208929.

Gebert, M., M. Delgado-Baquerizo, A. Oliverio, et al. (2018). “Ecological Analyses of Mycobacteria in Showerhead Biofilms and Their Relevance to Human Health”. In: mBio 9.5. cited By 30, pp. 1-15. DOI: 10.1128/mbio.01614-18.

Geisen, S., E. Mitchell, S. Adl, et al. (2018). “Soil Protists: A Fertile Frontier in Soil Biology Research”. In: FEMS Microbiology Reviews 42.3. cited By 75, pp. 293-323. DOI: 10.1093/femsre/fuy006.

Geisen, S., L. Snoek, F. ten Hooven, et al. (2018). “Integrating Quantitative Morphological and Qualitative Molecular Methods to Analyse Soil Nematode Community Responses to Plant Range Expansion”. In: Methods in Ecology and Evolution 9.6. cited By 25, pp. 1366-1378. DOI: 10.1111/2041-210X.12999.

Guo, S., W. Xiong, H. Xu, et al. (2018). “Continuous Application of Different Fertilizers Induces Distinct Bulk and Rhizosphere Soil Protist Communities”. In: European Journal of Soil Biology 88. cited By 9, pp. 8-14. DOI: 10.1016/j.ejsobi.2018.05.007.

Hernández-Ruiz, M., E. Barber-Lluch, A. Prieto, et al. (2018). “Seasonal Succession of Small Planktonic Eukaryotes Inhabiting Surface Waters of a Coastal Upwelling System”. In: Environmental Microbiology 20.8. cited By 14, pp. 2955-2973. DOI: 10.1111/1462-2920.14313.

Hervé, V., B. Leroy, A. Da Silva Pires, et al. (2018). “Aquatic Urban Ecology at the Scale of a Capital: Community Structure and Interactions in Street Gutters”. In: ISME Journal 12.1. cited By 5, pp. 253-266. DOI: 10.1038/ismej.2017.166.

Hu, S., P. Connell, L. Mesrop, et al. (2018). “A Hard Day’s Night: Diel Shifts in Microbial Eukaryotic Activity in the North Pacific Subtropical Gyre”. In: Frontiers in Marine Science 5 (OCT). cited By 12. DOI: 10.3389/fmars.2018.00351.

Hunsucker, K., G. Vora, J. Hunsucker, et al. (2018). “Biofilm Community Structure and the Associated Drag Penalties of a Groomed Fouling Release Ship Hull Coating”. In: Biofouling 34.2. cited By 8, pp. 162-172. DOI: 10.1080/08927014.2017.1417395.

Jing, H., Y. Zhang, Y. Li, et al. (2018). “Spatial Variability of Picoeukaryotic Communities in the Mariana Trench”. In: Scientific Reports 8.1. cited By 8. DOI: 10.1038/s41598-018-33790-4.

Kisand, V., L. Talas, A. Kisand, et al. (2018). “From Microbial Eukaryotes to Metazoan Vertebrates: Wide Spectrum Paleo-Diversity in Sedimentary Ancient DNA over the Last 14,500 Years”. In: Geobiology 16.6. cited By 5, pp. 628-639. DOI: 10.1111/gbi.12307.

Kuwata, A., K. Yamada, M. Ichinomiya, et al. (2018). “Bolidophyceae, a Sister Picoplanktonic Group of Diatoms - A Review”. In: Frontiers in Marine Science 5 (OCT). cited By 11. DOI: 10.3389/fmars.2018.00370.

López-Escardó, D., J. Paps, C. De Vargas, et al. (2018). “Metabarcoding Analysis on European Coastal Samples Reveals New Molecular Metazoan Diversity”. In: Scientific Reports 8.1. cited By 14. DOI: 10.1038/s41598-018-27509-8.

Laroche, O., S. Wood, L. Tremblay, et al. (2018). “A Cross-Taxa Study Using Environmental DNA/RNA Metabarcoding to Measure Biological Impacts of Offshore Oil and Gas Drilling and Production Operations”. In: Marine Pollution Bulletin 127. cited By 27, pp. 97-107. DOI: 10.1016/j.marpolbul.2017.11.042.

Leblanc, K., B. Quéguiner, F. Diaz, et al. (2018). “Nanoplanktonic Diatoms Are Globally Overlooked but Play a Role in Spring Blooms and Carbon Export”. In: Nature Communications 9.1. cited By 36. DOI: 10.1038/s41467-018-03376-9.

Leff, J., R. Bardgett, A. Wilkinson, et al. (2018). “Predicting the Structure of Soil Communities from Plant Community Taxonomy, Phylogeny, and Traits”. In: ISME Journal 12.7. cited By 71, pp. 1794-1805. DOI: 10.1038/s41396-018-0089-x.

Lentendu, G., F. Mahé, D. Bass, et al. (2018). “Consistent Patterns of High Alpha and Low Beta Diversity in Tropical Parasitic and Free-Living Protists”. In: Molecular Ecology 27.13. cited By 16, pp. 2846-2857. DOI: 10.1111/mec.14731.

Lewitus, E., L. Bittner, S. Malviya, et al. (2018). “Clade-Specific Diversification Dynamics of Marine Diatoms since the Jurassic”. In: Nature Ecology and Evolution 2.11. cited By 16, pp. 1715-1723. DOI: 10.1038/s41559-018-0691-3.

Li, F., Y. Peng, W. Fang, et al. (2018). “Application of Environmental DNA Metabarcoding for Predicting Anthropogenic Pollution in Rivers”. In: Environmental Science and Technology 52.20. cited By 35, pp. 11708-11719. DOI: 10.1021/acs.est.8b03869.

Li, R., N. Jiao, A. Warren, et al. (2018). “Changes in Community Structure of Active Protistan Assemblages from the Lower Pearl River to Coastal Waters of the South China Sea”. In: European Journal of Protistology 63. cited By 13, pp. 72-82. DOI: 10.1016/j.ejop.2018.01.004.

Morard, R., M. Garet-Delmas, F. Mahé, et al. (2018). “Surface Ocean Metabarcoding Confirms Limited Diversity in Planktonic Foraminifera but Reveals Unknown Hyper-Abundant Lineages”. In: Scientific Reports 8.1. cited By 11. DOI: 10.1038/s41598-018-20833-z.

Mordret, S., R. Piredda, D. Vaulot, et al. (2018). “Dinoref: A Curated Dinoflagellate (Dinophyceae) Reference Database for the 18S rRNA Gene”. In: Molecular Ecology Resources 18.5. cited By 15, pp. 974-987. DOI: 10.1111/1755-0998.12781.

Moreno-Pino, M., B. Krock, R. De la Iglesia, et al. (2018). “Next Generation Sequencing and Mass Spectrometry Reveal High Taxonomic Diversity and Complex Phytoplankton-Phycotoxins Patterns in Southeastern Pacific Fjords”. In: Toxicon 151. cited By 6, pp. 5-14. DOI: 10.1016/j.toxicon.2018.06.078.

Mucko, M., S. Bosak, R. Casotti, et al. (2018). “Winter Picoplankton Diversity in an Oligotrophic Marginal Sea”. In: Marine Genomics 42. cited By 2, pp. 14-24. DOI: 10.1016/j.margen.2018.09.002.

Oliverio, A., J. Power, A. Washburne, et al. (2018). “The Ecology and Diversity of Microbial Eukaryotes in Geothermal Springs”. In: ISME Journal 12.8. cited By 12, pp. 1918-1928. DOI: 10.1038/s41396-018-0104-2.

Pearman, J., F. Afandi, P. Hong, et al. (2018). “Plankton Community Assessment in Anthropogenic-Impacted Oligotrophic Coastal Regions”. In: Environmental Science and Pollution Research 25.31. cited By 4, pp. 31017-31030. DOI: 10.1007/s11356-018-3072-1.

Pearman, J., M. Leray, R. Villalobos, et al. (2018). “Cross-Shelf Investigation of Coral Reef Cryptic Benthic Organisms Reveals Diversity Patterns of the Hidden Majority”. In: Scientific Reports 8.1. cited By 20. DOI: 10.1038/s41598-018-26332-5.

Piwosz, K., J. CaÅ‚kiewicz, M. GoÅ‚Ä™biewski, et al. (2018). “Diversity and Community Composition of Pico- and Nanoplanktonic Protists in the Vistula River Estuary (Gulf of GdaÅ„sk, Baltic Sea)”. In: Estuarine, Coastal and Shelf Science 207. cited By 6, pp. 242-249. DOI: 10.1016/j.ecss.2018.04.013.

Rachik, S., U. Christaki, L. Li, et al. (2018). “Diversity and Potential Activity Patterns of Planktonic Eukaryotic Microbes in a Mesoeutrophic Coastal Area (Eastern English Channel)”. In: PLoS ONE 13.5. cited By 4. DOI: 10.1371/journal.pone.0196987.

Reis, A. van der, O. Laroche, A. Jeffs, et al. (2018). “Preliminary Analysis of New Zealand Scampi (Metanephrops Challengeri) Diet Using Metabarcoding”. In: PeerJ 2018.9. cited By 4. DOI: 10.7717/peerj.5641.

Ren, K., Y. Xue, R. Rønn, et al. (2018). “Dynamics and Determinants of Amoeba Community, Occurrence and Abundance in Subtropical Reservoirs and Rivers”. In: Water Research 146. cited By 9, pp. 177-186. DOI: 10.1016/j.watres.2018.09.011.

Ser-Giacomi, E., L. Zinger, S. Malviya, et al. (2018). “Ubiquitous Abundance Distribution of Non-Dominant Plankton across the Global Ocean”. In: Nature Ecology and Evolution 2.8. cited By 14, pp. 1243-1249. DOI: 10.1038/s41559-018-0587-2.

Stefanidou, N., S. Genitsaris, J. Lopez-Bautista, et al. (2018). “Unicellular Eukaryotic Community Response to Temperature and Salinity Variation in Mesocosm Experiments”. In: Frontiers in Microbiology 9 (OCT). cited By 7. DOI: 10.3389/fmicb.2018.02444.

Stern, R., A. Kraberg, E. Bresnan, et al. (2018). “Molecular Analyses of Protists in Long-Term Observation Programmes - Current Status and Future Perspectives”. In: Journal of Plankton Research 40.5. cited By 16, pp. 519-536. DOI: 10.1093/plankt/fby035.

Stoeck, T., R. Kochems, D. Forster, et al. (2018). “Metabarcoding of Benthic Ciliate Communities Shows High Potential for Environmental Monitoring in Salmon Aquaculture”. In: Ecological Indicators 85. cited By 31, pp. 153-164. DOI: 10.1016/j.ecolind.2017.10.041.

Stoeck, T., H. Pan, V. Dully, et al. (2018). “Towards an eDNA Metabarcode-Based Performance Indicator for Full-Scale Municipal Wastewater Treatment Plants”. In: Water Research 144. cited By 5, pp. 322-331. DOI: 10.1016/j.watres.2018.07.051.

Szelecz, I., S. Lösch, C. Seppey, et al. (2018). “Comparative Analysis of Bones, Mites, Soil Chemistry, Nematodes and Soil Micro-Eukaryotes from a Suspected Homicide to Estimate the Post-Mortem Interval”. In: Scientific Reports 8.1. cited By 18. DOI: 10.1038/s41598-017-18179-z.

Taberlet, P., A. Bonin, L. Zinger, et al. (2018). Environmental DNA: For Biodiversity Research and Monitoring. cited By 177 , pp. 1-253. DOI: 10.1093/oso/9780198767220.001.0001.

Tan, S. and H. Liu (2018). “Unravel the Hidden Protistan Diversity: Application of Blocking Primers to Suppress PCR Amplification of Metazoan DNA”. In: Applied Microbiology and Biotechnology 102.1. cited By 5, pp. 389-401. DOI: 10.1007/s00253-017-8565-1.

Tragin, M. and D. Vaulot (2018). “Green Microalgae in Marine Coastal Waters: The Ocean Sampling Day (OSD) Dataset”. In: Scientific Reports 8.1. cited By 32. DOI: 10.1038/s41598-018-32338-w.

Tragin, M., A. Zingone, and D. Vaulot (2018). “Comparison of Coastal Phytoplankton Composition Estimated from the V4 and V9 Regions of the 18S rRNA Gene with a Focus on Photosynthetic Groups and Especially Chlorophyta”. In: Environmental Microbiology 20.2. cited By 41, pp. 506-520. DOI: 10.1111/1462-2920.13952.

Vader, A., H. Laughinghouse, C. Griffiths, et al. (2018). “Proton-Pumping Rhodopsins Are Abundantly Expressed by Microbial Eukaryotes in a High-Arctic Fjord”. In: Environmental Microbiology 20.2. cited By 2, pp. 890-902. DOI: 10.1111/1462-2920.14035.

Varkey, D., S. Mazard, T. Jeffries, et al. (2018). “Stormwater Influences Phytoplankton Assemblages within the Diverse, but Impacted Sydney Harbour Estuary”. In: PLoS ONE 13.12. cited By 2. DOI: 10.1371/journal.pone.0209857.

Venter, P., F. Nitsche, and H. Arndt (2018). “The Hidden Diversity of Flagellated Protists in Soil”. In: Protist 169.3. cited By 3, pp. 432-449. DOI: 10.1016/j.protis.2018.04.007.

Venter, P., F. Nitsche, A. Scherwass, et al. (2018). “Discrepancies between Molecular and Morphological Databases of Soil Ciliates Studied for Temperate Grasslands of Central Europe”. In: Protist 169.4. cited By 4, pp. 521-538. DOI: 10.1016/j.protis.2018.04.001.

Wang, Y., T. Shi, G. Huang, et al. (2018). “Molecular Detection of Eukaryotic Diets and Gut Mycobiomes in Two Marine Sediment-Dwelling Worms, Sipunculus Nudus and Urechis Unicinctus”. In: Microbes and Environments 33.3. cited By 0, pp. 290-300. DOI: 10.1264/jsme2.ME18065.

Wangensteen, O., E. Cebrian, and C. Palacín (2018). “Under the Canopy: Community-Wide Effects of Invasive Algae in Marine Protected Areas Revealed by Metabarcoding”. In: Marine Pollution Bulletin 127. cited By 14, pp. 54-66. DOI: 10.1016/j.marpolbul.2017.11.033.

Ward, G., S. Neuhauser, R. Groben, et al. (2018). “Environmental Sequencing Fills the Gap between Parasitic Haplosporidians and Free-Living Giant Amoebae”. In: Journal of Eukaryotic Microbiology 65.5. cited By 13, pp. 574-586. DOI: 10.1111/jeu.12501.

Wu, W. and H. Liu (2018). “Disentangling Protist Communities Identified from DNA and RNA Surveys in the Pearl River–South China Sea Continuum during the Wet and Dry Seasons”. In: Molecular Ecology 27.22. cited By 5, pp. 4627-4640. DOI: 10.1111/mec.14867.

Wu, W., H. Lu, A. Sastri, et al. (2018). “Contrasting the Relative Importance of Species Sorting and Dispersal Limitation in Shaping Marine Bacterial versus Protist Communities”. In: ISME Journal 12.2. cited By 60, pp. 485-494. DOI: 10.1038/ismej.2017.183.

Wylezich, C., D. Herlemann, and K. Jürgens (2018). “Improved 18S rDNA Amplification Protocol for Assessing Protist Diversity in Oxygen-Deficient Marine Systems”. In: Aquatic Microbial Ecology 81.1. cited By 4, pp. 83-94. DOI: 10.3354/ame01864.

Xie, Y., T. Floehr, X. Zhang, et al. (2018). “In Situ Microbiota Distinguished Primary Anthropogenic Stressor in Freshwater Sediments”. In: Environmental Pollution 239. cited By 11, pp. 189-197. DOI: 10.1016/j.envpol.2018.03.099.

Xie, Y., X. Zhang, J. Yang, et al. (2018). “eDNA-Based Bioassessment of Coastal Sediments Impacted by an Oil Spill”. In: Environmental Pollution 238. cited By 20, pp. 739-748. DOI: 10.1016/j.envpol.2018.02.081.

Zaiko, A., X. Pochon, E. Garcia-Vazquez, et al. (2018). “Advantages and Limitations of Environmental DNA/RNA Tools for Marine Biosecurity: Management and Surveillance of Non-Indigenous Species”. In: Frontiers in Marine Science 5 (SEP). cited By 28. DOI: 10.3389/fmars.2018.00322.

Zhao, H., X. Li, Z. Zhang, et al. (2018). “Drivers and Assemblies of Soil Eukaryotic Microbes among Different Soil Habitat Types in a Semi-Arid Mountain in China”. In: PeerJ 2018.12. cited By 5. DOI: 10.7717/peerj.6042.

Zhu, P., Y. Wang, T. Shi, et al. (2018). “Genetic Diversity of Benthic Microbial Eukaryotes in Response to Spatial Heterogeneity of Sediment Geochemistry in a Mangrove Ecosystem”. In: Estuaries and Coasts 41.3. cited By 9, pp. 751-764. DOI: 10.1007/s12237-017-0317-z.

Zouari, A., M. Hassen, V. Balagué, et al. (2018). “Picoeukaryotic Diversity in the Gulf of Gabès: Variability Patterns and Relationships to Nutrients and Water Masses”. In: Aquatic Microbial Ecology 81.1. cited By 6, pp. 37-53. DOI: 10.3354/ame01857.

2017

Alves-De-Souza, C., T. Benevides, J. Santos, et al. (2017). “Does Environmental Heterogeneity Explain Temporal β Diversity of Small Eukaryotic Phytoplankton? Example from a Tropical Eutrophic Coastal Lagoon”. In: Journal of Plankton Research 39.4. cited By 11, pp. 698-714. DOI: 10.1093/plankt/fbx026.

Berney, C., A. Ciuprina, S. Bender, et al. (2017). “UniEuk: Time to Speak a Common Language in Protistology!” In: Journal of Eukaryotic Microbiology 64.3. cited By 30, pp. 407-411. DOI: 10.1111/jeu.12414.

Biard, T., E. Bigeard, S. Audic, et al. (2017). “Biogeography and Diversity of Collodaria (Radiolaria) in the Global Ocean”. In: ISME Journal 11.6. cited By 25, pp. 1331-1344. DOI: 10.1038/ismej.2017.12.

Christaki, U., S. Genitsaris, S. Monchy, et al. (2017). “Parasitic Eukaryotes in a Meso-Eutrophic Coastal System with Marked Phaeocystis Globosa Blooms”. In: Frontiers in Marine Science 4 (DEC). cited By 4. DOI: 10.3389/fmars.2017.00416.

Deiner, K., H. Bik, E. Mächler, et al. (2017). “Environmental DNA Metabarcoding: Transforming How We Survey Animal and Plant Communities”. In: Molecular Ecology 26.21. cited By 318, pp. 5872-5895. DOI: 10.1111/mec.14350.

Domaizon, I., A. Winegardner, E. Capo, et al. (2017). “DNA-Based Methods in Paleolimnology: New Opportunities for Investigating Long-Term Dynamics of Lacustrine Biodiversity”. In: Journal of Paleolimnology 58.1. cited By 36. DOI: 10.1007/s10933-017-9958-y.

Dos Santos, A., P. Gourvil, M. Tragin, et al. (2017). “Diversity and Oceanic Distribution of Prasinophytes Clade VII, the Dominant Group of Green Algae in Oceanic Waters”. In: ISME Journal 11.2. cited By 37, pp. 512-528. DOI: 10.1038/ismej.2016.120.

Dunthorn, M., H. Kauserud, D. Bass, et al. (2017). “Yeasts Dominate Soil Fungal Communities in Three Lowland Neotropical Rainforests”. In: Environmental Microbiology Reports 9.5. cited By 10, pp. 668-675. DOI: 10.1111/1758-2229.12575.

Filker, S., D. Forster, L. Weinisch, et al. (2017). “Transition Boundaries for Protistan Species Turnover in Hypersaline Waters of Different Biogeographic Regions”. In: Environmental Microbiology 19.8. cited By 12, pp. 3186-3200. DOI: 10.1111/1462-2920.13805.

Fletcher, L., A. Zaiko, J. Atalah, et al. (2017). “Bilge Water as a Vector for the Spread of Marine Pests: A Morphological, Metabarcoding and Experimental Assessment”. In: Biological Invasions 19.10. cited By 20, pp. 2851-2867. DOI: 10.1007/s10530-017-1489-y.

Foster, Z., T. Sharpton, and N. Grünwald (2017). “Metacoder: An R Package for Visualization and Manipulation of Community Taxonomic Diversity Data”. In: PLoS Computational Biology 13.2. cited By 115. DOI: 10.1371/journal.pcbi.1005404.

Frank, N., T. Helge Abuldhauge, and J. Daniel (2017). “Bridging the Gap between Morphological Species and Molecular Barcodes – Exemplified by Loricate Choanoflagellates”. In: European Journal of Protistology 57. cited By 14, pp. 26-37. DOI: 10.1016/j.ejop.2016.10.006.

GoÅ‚Ä™biewski, M., J. CaÅ‚kiewicz, S. Creer, et al. (2017). “Tideless Estuaries in Brackish Seas as Possible Freshwater-Marine Transition Zones for Bacteria: The Case Study of the Vistula River Estuary”. In: Environmental Microbiology Reports 9.2. cited By 15, pp. 129-143. DOI: 10.1111/1758-2229.12509.

Gran-Stadniczeñko, S., L. Å upraha, E. Egge, et al. (2017). “Haptophyte Diversity and Vertical Distribution Explored by 18S and 28S Ribosomal RNA Gene Metabarcoding and Scanning Electron Microscopy”. In: Journal of Eukaryotic Microbiology 64.4. cited By 16, pp. 514-532. DOI: 10.1111/jeu.12388.

Groendahl, S., M. Kahlert, and P. Fink (2017). “The Best of Both Worlds: A Combined Approach for Analyzing Microalgal Diversity via Metabarcoding and Morphology-Based Methods”. In: PLoS ONE 12.2. cited By 17. DOI: 10.1371/journal.pone.0172808.

Heinz, K., P. Zanoni, R. Oliveira, et al. (2017). “Recycled Paper Sludge Microbial Community as a Potential Source of Cellulase and Xylanase Enzymes”. In: Waste and Biomass Valorization 8.6. cited By 5, pp. 1907-1917. DOI: 10.1007/s12649-016-9792-x.

Hugerth, L. and A. Andersson (2017). “Analysing Microbial Community Composition through Amplicon Sequencing: From Sampling to Hypothesis Testing”. In: Frontiers in Microbiology 8 (SEP). cited By 73. DOI: 10.3389/fmicb.2017.01561.

Jacob, F., T. Melachio, G. Njitchouang, et al. (2017). “Intestinal Bacterial Communities of Trypanosome-Infected and Uninfected Glossina Palpalis Palpalis from Three Human African Trypanomiasis Foci in Cameroon”. In: Frontiers in Microbiology 8 (AUG). cited By 6. DOI: 10.3389/fmicb.2017.01464.

Kataoka, T., H. Yamaguchi, M. Sato, et al. (2017). “Seasonal and Geographical Distribution of Near-Surface Small Photosynthetic Eukaryotes in the Western North Pacific Determined by Pyrosequencing of 18S rDNA”. In: FEMS Microbiology Ecology 93.2. cited By 14. DOI: 10.1093/femsec/fiw229.

Kaysen, A., A. Heintz-Buschart, E. Muller, et al. (2017). “Integrated Meta-Omic Analyses of the Gastrointestinal Tract Microbiome in Patients Undergoing Allogeneic Hematopoietic Stem Cell Transplantation”. In: Translational Research 186. cited By 14, pp. 79-94.e1. DOI: 10.1016/j.trsl.2017.06.008.

Khomich, M., H. Kauserud, R. Logares, et al. (2017). “Planktonic Protistan Communities in Lakes along a Large-Scale Environmental Gradient”. In: FEMS Microbiology Ecology 93.4. cited By 17. DOI: 10.1093/femsec/fiw231.

Laroche, O., S. Wood, L. Tremblay, et al. (2017). “Metabarcoding Monitoring Analysis: The Pros and Cons of Using Co-Extracted Environmental DNA and RNA Data to Assess Offshore Oil Production Impacts on Benthic Communities”. In: PeerJ 2017.5. cited By 33. DOI: 10.7717/peerj.3347.

Lee, K., L. Ab Samad, P. Lwin, et al. (2017). “On the Rocks: Microbiological Quality and Microbial Diversity of Packaged Ice in Southern California”. In: Journal of Food Protection 80.6. cited By 2, pp. 1041-1049. DOI: 10.4315/0362-028X.JFP-16-295.

Leray, M. and N. Knowlton (2017). “Random Sampling Causes the Low Reproducibility of Rare Eukaryotic OTUs in Illumina COI Metabarcoding”. In: PeerJ 2017.3. cited By 54. DOI: 10.7717/peerj.3006.

Machida, R., M. Leray, S. Ho, et al. (2017). “Data Descriptor: Metazoan Mitochondrial Gene Sequence Reference Datasets for Taxonomic Assignment of Environmental Samples”. In: Scientific Data 4. cited By 45. DOI: 10.1038/sdata.2017.27.

Mahé, F., C. De Vargas, D. Bass, et al. (2017). “Parasites Dominate Hyperdiverse Soil Protist Communities in Neotropical Rainforests”. In: Nature Ecology and Evolution 1.4. cited By 95. DOI: 10.1038/s41559-017-0091.

Marie, D., F. Le Gall, R. Edern, et al. (2017). “Improvement of Phytoplankton Culture Isolation Using Single Cell Sorting by Flow Cytometry”. In: Journal of Phycology 53.2. cited By 12, pp. 271-282. DOI: 10.1111/jpy.12495.

Meshram, A., A. Vader, S. Kristiansen, et al. (2017). “Microbial Eukaryotes in an Arctic Under-Ice Spring Bloom North of Svalbard”. In: Frontiers in Microbiology 8 (JUN). cited By 9. DOI: 10.3389/fmicb.2017.01099.

Morard, R., F. Lejzerowicz, K. Darling, et al. (2017). “Planktonic Foraminifera-Derived Environmental DNA Extracted from Abyssal Sediments Preserves Patterns of Plankton Macroecology”. In: Biogeosciences 14.11. cited By 12, pp. 2741-2754. DOI: 10.5194/bg-14-2741-2017.

Mukherjee, I., Y. Hodoki, and S. Nakano (2017). “Seasonal Dynamics of Heterotrophic and Plastidic Protists in the Water Column of Lake Biwa, Japan”. In: Aquatic Microbial Ecology 80.2. cited By 5, pp. 123-137. DOI: 10.3354/ame01843.

Pagenkopp Lohan, K., R. Fleischer, K. Carney, et al. (2017). “Molecular Characterisation of Protistan Species and Communities in Ships’ Ballast Water across Three U.S. Coasts”. In: Diversity and Distributions 23.6. cited By 12, pp. 680-691. DOI: 10.1111/ddi.12550.

Pagenkopp Lohan, K., R. Fleischer, M. Torchin, et al. (2017). “Protistan Biogeography: A Snapshot across a Major Shipping Corridor Spanning Two Oceans”. In: Protist 168.2. cited By 2, pp. 183-196. DOI: 10.1016/j.protis.2016.12.003.

Pan, J., J. del Campo, and P. Keeling (2017). “Reference Tree and Environmental Sequence Diversity of Labyrinthulomycetes”. In: Journal of Eukaryotic Microbiology 64.1. cited By 20, pp. 88-96. DOI: 10.1111/jeu.12342.

Pearman, J., J. Ellis, X. Irigoien, et al. (2017). “Microbial Planktonic Communities in the Red Sea: High Levels of Spatial and Temporal Variability Shaped by Nutrient Availability and Turbulence”. In: Scientific Reports 7.1. cited By 29. DOI: 10.1038/s41598-017-06928-z.

Penna, A., S. Casabianca, A. Guerra, et al. (2017). “Analysis of Phytoplankton Assemblage Structure in the Mediterranean Sea Based on High-Throughput Sequencing of Partial 18S rRNA Sequences”. In: Marine Genomics 36. cited By 12, pp. 49-55. DOI: 10.1016/j.margen.2017.06.001.

Piredda, R., D. Sarno, C. Lange, et al. (2017). “Diatom Resting Stages in Surface Sediments: A Pilot Study Comparing next Generation Sequencing and Serial Dilution Cultures”. In: Cryptogamie, Algologie 38.1. cited By 12, pp. 31-46. DOI: 10.7872/crya/v38.iss1.2017.31.

Piredda, R., M. Tomasino, A. D’Erchia, et al. (2017). “Diversity and Temporal Patterns of Planktonic Protist Assemblages at a Mediterranean Long Term Ecological Research Site”. In: FEMS Microbiology Ecology 93.1. cited By 57. DOI: 10.1093/femsec/fiw200.

Pochon, X., A. Zaiko, L. Fletcher, et al. (2017). “Wanted Dead or Alive? Using Metabarcoding of Environmental DNA and RNA to Distinguish Living Assemblages for Biosecurity Applications”. In: PLoS ONE 12.11. cited By 52. DOI: 10.1371/journal.pone.0187636.

Reich, M. and A. Labes (2017). “How to Boost Marine Fungal Research: A First Step towards a Multidisciplinary Approach by Combining Molecular Fungal Ecology and Natural Products Chemistry”. In: Marine Genomics 36. cited By 15, pp. 57-75. DOI: 10.1016/j.margen.2017.09.007.

Saghaï, A., A. Gutiérrez-Preciado, P. Deschamps, et al. (2017). “Unveiling Microbial Interactions in Stratified Mat Communities from a Warm Saline Shallow Pond”. In: Environmental Microbiology 19.6. cited By 13, pp. 2405-2421. DOI: 10.1111/1462-2920.13754.

Salvitti, L., S. Wood, R. Fairweather, et al. (2017). “In Situ Accumulation of Tetrodotoxin in Non-Toxic Pleurobranchaea Maculata (Opisthobranchia)”. In: Aquatic Sciences 79.2. cited By 5, pp. 335-344. DOI: 10.1007/s00027-016-0500-5.

Santos, S., I. Nunes, T. Nielsen, et al. (2017). “Soil DNA Extraction Procedure Influences Protist 18S rRNA Gene Community Profiling Outcome”. In: Protist 168.3. cited By 9, pp. 283-293. DOI: 10.1016/j.protis.2017.03.002.

Schnittler, M., O. Shchepin, N. Dagamac, et al. (2017). “Barcoding Myxomycetes with Molecular Markers: Challenges and Opportunities”. In: Nova Hedwigia 104.1-3. cited By 27, pp. 323-341. DOI: 10.1127/nova_hedwigia/2017/0397.

Seppey, C., D. Singer, K. Dumack, et al. (2017). “Distribution Patterns of Soil Microbial Eukaryotes Suggests Widespread Algivory by Phagotrophic Protists as an Alternative Pathway for Nutrient Cycling”. In: Soil Biology and Biochemistry 112. cited By 41, pp. 68-76. DOI: 10.1016/j.soilbio.2017.05.002.

Simon, N., E. Foulon, D. Grulois, et al. (2017). “Revision of the Genus Micromonas Manton et Parke (Chlorophyta, Mamiellophyceae), of the Type Species m. Pusilla (Butcher) Manton & Parke and of the Species m. Commoda van Baren, Bachy and Worden and Description of Two New Species Based on the Genetic and Phenotypic Characterization of Cultured Isolates”. In: Protist 168.5. cited By 22, pp. 612-635. DOI: 10.1016/j.protis.2017.09.002.

Smith, K., G. Kohli, S. Murray, et al. (2017). “Assessment of the Metabarcoding Approach for Community Analysis of Benthic-Epiphytic Dinoflagellates Using Mock Communities”. In: New Zealand Journal of Marine and Freshwater Research 51.4. cited By 21, pp. 555-576. DOI: 10.1080/00288330.2017.1298632.

Sun, P., L. Huang, D. Xu, et al. (2017). “Marked Seasonality and High Spatial Variation in Estuarine Ciliates Are Driven by Exchanges between the ‘abundant’ and ‘Intermediate’ Biospheres”. In: Scientific Reports 7.1. cited By 16. DOI: 10.1038/s41598-017-10308-y.

Tirichine, L., A. Rastogi, and C. Bowler (2017). “Recent Progress in Diatom Genomics and Epigenomics”. In: Current Opinion in Plant Biology 36. cited By 18, pp. 46-55. DOI: 10.1016/j.pbi.2017.02.001.

Torruella, G., D. Moreira, and P. López-García (2017). “Phylogenetic and Ecological Diversity of Apusomonads, a Lineage of Deep-Branching Eukaryotes”. In: Environmental Microbiology Reports 9.2. cited By 4, pp. 113-119. DOI: 10.1111/1758-2229.12507.

Venter, P., F. Nitsche, A. Domonell, et al. (2017). “The Protistan Microbiome of Grassland Soil: Diversity in the Mesoscale”. In: Protist 168.5. cited By 18, pp. 546-564. DOI: 10.1016/j.protis.2017.03.005.

Wampach, L., A. Heintz-Buschart, A. Hogan, et al. (2017). “Colonization and Succession within the Human Gut Microbiome by Archaea, Bacteria, and Microeukaryotes during the First Year of Life”. In: Frontiers in Microbiology 8 (MAY). cited By 86. DOI: 10.3389/fmicb.2017.00738.

Wang, Y., X. Guo, P. Zheng, et al. (2017). “Distinct Seasonality of Chytrid-Dominated Benthic Fungal Communities in the Neritic Oceans (Bohai Sea and North Yellow Sea)”. In: Fungal Ecology 30. cited By 10, pp. 55-66. DOI: 10.1016/j.funeco.2017.08.008.

Weber, F., A. Mylnikov, K. Jürgens, et al. (2017). “Culturing Heterotrophic Protists from the Baltic Sea: Mostly the “Usual Suspects” but a Few Novelties as Well”. In: Journal of Eukaryotic Microbiology 64.2. cited By 5, pp. 153-163. DOI: 10.1111/jeu.12347.

Wu, W., R. Logares, B. Huang, et al. (2017). “Abundant and Rare Picoeukaryotic Sub-Communities Present Contrasting Patterns in the Epipelagic Waters of Marginal Seas in the Northwestern Pacific Ocean”. In: Environmental Microbiology 19.1. cited By 38, pp. 287-300. DOI: 10.1111/1462-2920.13606.

Xie, Y., S. Hong, S. Kim, et al. (2017). “Ecogenomic Responses of Benthic Communities under Multiple Stressors along the Marine and Adjacent Riverine Areas of Northern Bohai Sea, China”. In: Chemosphere 172. cited By 21, pp. 166-174. DOI: 10.1016/j.chemosphere.2016.12.121.

Xie, Y., J. Wang, J. Yang, et al. (2017). “Environmental DNA Metabarcoding Reveals Primary Chemical Contaminants in Freshwater Sediments from Different Land-Use Types”. In: Chemosphere 172. cited By 22, pp. 201-209. DOI: 10.1016/j.chemosphere.2016.12.117.

Xu, D., N. Jiao, R. Ren, et al. (2017). “Distribution and Diversity of Microbial Eukaryotes in Bathypelagic Waters of the South China Sea”. In: Journal of Eukaryotic Microbiology 64.3. cited By 21, pp. 370-382. DOI: 10.1111/jeu.12372.

2016

Aguilar, M., E. Richardson, B. Tan, et al. (2016). “Next-Generation Sequencing Assessment of Eukaryotic Diversity in Oil Sands Tailings Ponds Sediments and Surface Water”. In: Journal of Eukaryotic Microbiology 63.6. cited By 18, pp. 732-743. DOI: 10.1111/jeu.12320.

Amato, K., J. Metcalf, S. Song, et al. (2016). “Using the Gut Microbiota as a Novel Tool for Examining Colobine Primate GI Health”. In: Global Ecology and Conservation 7. cited By 29, pp. 225-237. DOI: 10.1016/j.gecco.2016.06.004.

Angelakis, E., M. Yasir, D. Bachar, et al. (2016). “Gut Microbiome and Dietary Patterns in Different Saudi Populations and Monkeys”. In: Scientific Reports 6. cited By 31. DOI: 10.1038/srep32191.

Bass, D. and T. Bell (2016). Protist Systematics, Ecology and next Generation Sequencing. cited By 1 , pp. 195-216. DOI: 10.1017/CBO9781139236355.010.

Bass, D., J. Silberman, M. Brown, et al. (2016). “Coprophilic Amoebae and Flagellates, Including Guttulinopsis, Rosculus and Helkesimastix, Characterise a Divergent and Diverse Rhizarian Radiation and Contribute to a Large Diversity of Faecal-Associated Protists”. In: Environmental Microbiology 18.5. cited By 23, pp. 1604-1619. DOI: 10.1111/1462-2920.13235.

Boyer, F., C. Mercier, A. Bonin, et al. (2016). “Obitools: A Unix-Inspired Software Package for DNA Metabarcoding”. In: Molecular Ecology Resources 16.1. cited By 290, pp. 176-182. DOI: 10.1111/1755-0998.12428.

Campo, J. del, L. Guillou, E. Hehenberger, et al. (2016). “Ecological and Evolutionary Significance of Novel Protist Lineages”. In: European Journal of Protistology 55. cited By 15, pp. 4-11. DOI: 10.1016/j.ejop.2016.02.002.

Coelho, F., A. Louvado, P. Domingues, et al. (2016). “Integrated Analysis of Bacterial and Microeukaryotic Communities from Differentially Active Mud Volcanoes in the Gulf of Cadiz”. In: Scientific Reports 6. cited By 11. DOI: 10.1038/srep35272.

Cooper, M., D. Phalen, S. Donahoe, et al. (2016). “The Utility of Diversity Profiling Using Illumina 18S rRNA Gene Amplicon Deep Sequencing to Detect and Discriminate Toxoplasma Gondii among the Cyst-Forming Coccidia”. In: Veterinary Parasitology 216. cited By 7, pp. 38-45. DOI: 10.1016/j.vetpar.2015.12.011.

Cornejo-Castillo, F., A. Cabello, G. Salazar, et al. (2016). “Cyanobacterial Symbionts Diverged in the Late Cretaceous towards Lineage-Specific Nitrogen Fixation Factories in Single-Celled Phytoplankton”. In: Nature Communications 7. cited By 33. DOI: 10.1038/ncomms11071.

Dubourg, G., J. Lagier, S. Hüe, et al. (2016). “Gut Microbiota Associated with HIV Infection Is Significantly Enriched in Bacteria Tolerant to Oxygen”. In: BMJ Open Gastroenterology 3.1. cited By 30. DOI: 10.1136/bmjgast-2016-000080.

Ferrera, I., C. Giner, A. Reñé, et al. (2016). “Evaluation of Alternative High-Throughput Sequencing Methodologies for the Monitoring of Marine Picoplanktonic Biodiversity Based on rRNA Gene Amplicons”. In: Frontiers in Marine Science 3 (AUG). cited By 16. DOI: 10.3389/fmars.2016.00147.

Forster, D., M. Dunthorn, F. Mahé, et al. (2016). “Benthic Protists: The under-Charted Majority”. In: FEMS Microbiology Ecology 92.8. cited By 42. DOI: 10.1093/femsec/fiw120.

Forster, D., M. Dunthorn, T. Stoeck, et al. (2016). “Comparison of Three Clustering Approaches for Detecting Novel Environmental Microbial Diversity”. In: PeerJ 2016.2. cited By 16. DOI: 10.7717/peerj.1692.

Genitsaris, S., S. Monchy, E. Breton, et al. (2016). “Small-Scale Variability of Protistan Planktonic Communities Relative to Environmental Pressures and Biotic Interactions at Two Adjacent Coastal Stations”. In: Marine Ecology Progress Series 548. cited By 12, pp. 61-75. DOI: 10.3354/meps11647.

Genitsaris, S., S. Monchy, J. Denonfoux, et al. (2016). “Marine Microbial Community Structure Assessed from Combined Metagenomic Analysis and Ribosomal Amplicon Deep-Sequencing”. In: Marine Biology Research 12.1. cited By 4, pp. 30-42. DOI: 10.1080/17451000.2015.1084425.

Gimmler, A., R. Korn, C. De Vargas, et al. (2016). “The Tara Oceans Voyage Reveals Global Diversity and Distribution Patterns of Marine Planktonic Ciliates”. In: Scientific Reports 6. cited By 36. DOI: 10.1038/srep33555.

Giner, C., I. Forn, S. Romac, et al. (2016). “Environmental Sequencing Provides Reasonable Estimates of the Relative Abundance of Specific Picoeukaryotes”. In: Applied and Environmental Microbiology 82.15. cited By 52, pp. 4757-4766. DOI: 10.1128/AEM.00560-16.

Groot, G. de, I. Laros, and S. Geisen (2016). “Molecular Identification of Soil Eukaryotes and Focused Approaches Targeting Protist and Faunal Groups Using High-Throughput Metabarcoding”. In: Methods in Molecular Biology 1399. cited By 7, pp. 125-140. DOI: 10.1007/978-1-4939-3369-3_7.

Guardiola, M., O. Wangensteen, P. Taberlet, et al. (2016). “Spatio-Temporal Monitoring of Deep-Sea Communities Using Metabarcoding of Sediment DNA and RNA”. In: PeerJ 2016.12. cited By 45. DOI: 10.7717/peerj.2807.

Hu, Y., B. Karlson, S. Charvet, et al. (2016). “Diversity of Pico- to Mesoplankton along the 2000 Km Salinity Gradient of the Baltic Sea”. In: Frontiers in Microbiology 7 (MAY). cited By 42. DOI: 10.3389/fmicb.2016.00679.

Ichinomiya, M., A. Dos Santos, P. Gourvil, et al. (2016). “Diversity and Oceanic Distribution of the Parmales (Bolidophyceae), a Picoplanktonic Group Closely Related to Diatoms”. In: ISME Journal 10.10. cited By 35, pp. 2419-2434. DOI: 10.1038/ismej.2016.38.

Kozlov, A., J. Zhang, P. Yilmaz, et al. (2016). “Phylogeny-Aware Identification and Correction of Taxonomically Mislabeled Sequences”. In: Nucleic Acids Research 44.11. cited By 38, pp. 5022-5033. DOI: 10.1093/nar/gkw396.

Le Bescot, N., F. Mahé, S. Audic, et al. (2016). “Global Patterns of Pelagic Dinoflagellate Diversity across Protist Size Classes Unveiled by Metabarcoding”. In: Environmental Microbiology 18.2. cited By 51, pp. 609-626. DOI: 10.1111/1462-2920.13039.

Leray, M. and N. Knowlton (2016). “Censusing Marine Eukaryotic Diversity in the Twenty-First Century”. In: Philosophical Transactions of the Royal Society B: Biological Sciences 371.1702. cited By 75. DOI: 10.1098/rstb.2015.0331.

Malviya, S., E. Scalco, S. Audic, et al. (2016). “Insights into Global Diatom Distribution and Diversity in the World’s Ocean”. In: Proceedings of the National Academy of Sciences of the United States of America 113.11. cited By 213, pp. E1516-E1525. DOI: 10.1073/pnas.1509523113.

Marquardt, M., A. Vader, E. Stübner, et al. (2016). “Strong Seasonality of Marine Microbial Eukaryotes in a High-Arctic Fjord (Isfjorden, in West Spitsbergen, Norway)”. In: Applied and Environmental Microbiology 82.6. cited By 38, pp. 1868-1880. DOI: 10.1128/AEM.03208-15.

More, R. and H. Purohit (2016). “The Identification of Discriminating Patterns from 16S rRNA Gene to Generate Signature for Bacillus Genus”. In: Journal of Computational Biology 23.8. cited By 5, pp. 651-661. DOI: 10.1089/cmb.2016.0002.

Moustaka-Gouni, M., K. Kormas, M. Scotti, et al. (2016). “Warming and Acidification Effects on Planktonic Heterotrophic Pico- and Nanoflagellates in a Mesocosm Experiment”. In: Protist 167.4. cited By 17, pp. 389-410. DOI: 10.1016/j.protis.2016.06.004.

Nitsche, F. (2016). “A Phylogenetic and Morphological Re-Investigation of Diaphanoeca Spiralifurca, Didymoeca Elongata and Polyoeca Dichotoma (Acanthoecida/Choanomonadida) from the Caribbean Sea”. In: European Journal of Protistology 52. cited By 3, pp. 58-64. DOI: 10.1016/j.ejop.2015.11.001.

Obbels, D., E. Verleyen, M. Mano, et al. (2016). “Bacterial and Eukaryotic Biodiversity Patterns in Terrestrial and Aquatic Habitats in the Sør Rondane Mountains, Dronning Maud Land, East Antarctica”. In: FEMS Microbiology Ecology 92.6. cited By 13, pp. 1-13. DOI: 10.1093/femsec/fiw041.

Pagenkopp Lohan, K., R. Fleischer, K. Carney, et al. (2016). “Amplicon-Based Pyrosequencing Reveals High Diversity of Protistan Parasites in Ships’ Ballast Water: Implications for Biogeography and Infectious Diseases”. In: Microbial Ecology 71.3. cited By 34, pp. 530-542. DOI: 10.1007/s00248-015-0684-6.

Pawlowski, J., F. Lejzerowicz, L. Apotheloz-Perret-Gentil, et al. (2016). “Protist Metabarcoding and Environmental Biomonitoring: Time for Change”. In: European Journal of Protistology 55. cited By 65, pp. 12-25. DOI: 10.1016/j.ejop.2016.02.003.

Pearman, J., H. Anlauf, X. Irigoien, et al. (2016). “Please Mind the Gap - Visual Census and Cryptic Biodiversity Assessment at Central Red Sea Coral Reefs”. In: Marine Environmental Research 118. cited By 22, pp. 20-30. DOI: 10.1016/j.marenvres.2016.04.011.

Pearman, J., S. Kürten, Y. Sarma, et al. (2016). “Biodiversity Patterns of Plankton Assemblages at the Extremes of the Red Sea”. In: FEMS Microbiology Ecology 92.3. cited By 23. DOI: 10.1093/femsec/fiw002.

Pernice, M., C. Giner, R. Logares, et al. (2016). “Large Variability of Bathypelagic Microbial Eukaryotic Communities across the World’s Oceans”. In: ISME Journal 10.4. cited By 73, pp. 945-958. DOI: 10.1038/ismej.2015.170.

Ramírez-Sánchez, O., P. Pérez-Rodríguez, L. Delaye, et al. (2016). “Plant Proteins Are Smaller Because They Are Encoded by Fewer Exons than Animal Proteins”. In: Genomics, Proteomics and Bioinformatics 14.6. cited By 18, pp. 357-370. DOI: 10.1016/j.gpb.2016.06.003.

Rimet, F., P. Chaumeil, F. Keck, et al. (2016). “R-Syst::Diatom: An Open-Access and Curated Barcode Database for Diatoms and Freshwater Monitoring”. In: Database-the Magazine of Electronic Database Reviews 2016. cited By 48. DOI: 10.1093/database/baw016.

Rocke, E., H. Jing, X. Xia, et al. (2016). “Effects of Hypoxia on the Phylogenetic Composition and Species Distribution of Protists in a Subtropical Harbor”. In: Microbial Ecology 72.1. cited By 5, pp. 96-105. DOI: 10.1007/s00248-016-0751-7.

Schiaffino, M., E. Lara, L. Fernández, et al. (2016). “Microbial Eukaryote Communities Exhibit Robust Biogeographical Patterns along a Gradient of Patagonian and Antarctic Lakes”. In: Environmental Microbiology 18.12. cited By 25, pp. 5249-5264. DOI: 10.1111/1462-2920.13566.

Scholz, B., L. Guillou, A. Marano, et al. (2016). “Zoosporic Parasites Infecting Marine Diatoms-A Black Box That Needs to Be Opened”. In: Fungal Ecology 19. cited By 42, pp. 59-76. DOI: 10.1016/j.funeco.2015.09.002.

Shazib, S., P. Vďačný, J. Kim, et al. (2016). “Molecular Phylogeny and Species Delimitation within the Ciliate Genus Spirostomum (Ciliophora, Postciliodesmatophora, Heterotrichea), Using the Internal Transcribed Spacer Region”. In: Molecular Phylogenetics and Evolution 102. cited By 21, pp. 128-144. DOI: 10.1016/j.ympev.2016.05.041.

Simon, M., P. López-García, P. Deschamps, et al. (2016). “Resilience of Freshwater Communities of Small Microbial Eukaryotes Undergoing Severe Drought Events”. In: Frontiers in Microbiology 7 (MAY). cited By 13. DOI: 10.3389/fmicb.2016.00812.

Singer, D., E. Lara, M. Steciow, et al. (2016). “High-Throughput Sequencing Reveals Diverse Oomycete Communities in Oligotrophic Peat Bog Micro-Habitat”. In: Fungal Ecology 23. cited By 21, pp. 42-47. DOI: 10.1016/j.funeco.2016.05.009.

Sun, P., J. Clamp, D. Xu, et al. (2016). “An Integrative Approach to Phylogeny Reveals Patterns of Environmental Distribution and Novel Evolutionary Relationships in a Major Group of Ciliates”. In: Scientific Reports 6. cited By 28. DOI: 10.1038/srep21695.

Volant, A., M. Héry, A. Desoeuvre, et al. (2016). “Spatial Distribution of Eukaryotic Communities Using High-Throughput Sequencing along a Pollution Gradient in the Arsenic-Rich Creek Sediments of Carnoulès Mine, France”. In: Microbial Ecology 72.3. cited By 11, pp. 608-620. DOI: 10.1007/s00248-016-0826-5.

Voudanta, E., K. Kormas, S. Monchy, et al. (2016). “Mussel Biofiltration Effects on Attached Bacteria and Unicellular Eukaryotes in Fish-Rearing Seawater”. In: PeerJ 2016.3. cited By 3. DOI: 10.7717/peerj.1829.

Zaiko, A., K. Schimanski, X. Pochon, et al. (2016). “Metabarcoding Improves Detection of Eukaryotes from Early Biofouling Communities: Implications for Pest Monitoring and Pathway Management”. In: Biofouling 32.6. cited By 34, pp. 671-684. DOI: 10.1080/08927014.2016.1186165.

Zoccarato, L., A. Pallavicini, F. Cerino, et al. (2016). “Water Mass Dynamics Shape Ross Sea Protist Communities in Mesopelagic and Bathypelagic Layers”. In: Progress in Oceanography 149. cited By 16, pp. 16-26. DOI: 10.1016/j.pocean.2016.10.003.

2015

Balzano, S., E. Abs, and S. Leterme (2015). “Protist Diversity along a Salinity Gradient in a Coastal Lagoon”. In: Aquatic Microbial Ecology 74.3. cited By 37, pp. 263-277. DOI: 10.3354/ame01740.

Bass, D., G. Stentiford, D. Littlewood, et al. (2015). “Diverse Applications of Environmental DNA Methods in Parasitology”. In: Trends in Parasitology 31.10. cited By 85, pp. 499-513. DOI: 10.1016/j.pt.2015.06.013.

Campo, J. del, D. Mallo, R. Massana, et al. (2015). “Diversity and Distribution of Unicellular Opisthokonts along the European Coast Analysed Using High-Throughput Sequencing”. In: Environmental Microbiology 17.9. cited By 30, pp. 3195-3207. DOI: 10.1111/1462-2920.12759.

Christaki, U., C. Georges, S. Genitsaris, et al. (2015). “Microzooplankton Community Associated with Phytoplankton Blooms in the Naturally Iron-Fertilized Kerguelen Area (Southern Ocean)”. In: FEMS Microbiology Ecology 91.7. cited By 9. DOI: 10.1093/femsec/fiv068.

De Vargas, C., S. Audic, N. Henry, et al. (2015). “Eukaryotic Plankton Diversity in the Sunlit Ocean”. In: Science 348.6237. cited By 724. DOI: 10.1126/science.1261605.

Decelle, J., S. Romac, R. Stern, et al. (2015). “PhytoREF: A Reference Database of the Plastidial 16S rRNA Gene of Photosynthetic Eukaryotes with Curated Taxonomy”. In: Molecular Ecology Resources 15.6. cited By 76, pp. 1435-1445. DOI: 10.1111/1755-0998.12401.

Egge, E., W. Eikrem, and B. Edvardsen (2015). “Deep-Branching Novel Lineages and High Diversity of Haptophytes in the Skagerrak (Norway) Uncovered by 454 Pyrosequencing”. In: Journal of Eukaryotic Microbiology 62.1. cited By 25, pp. 121-140. DOI: 10.1111/jeu.12157.

Esling, P., F. Lejzerowicz, and J. Pawlowski (2015). “Accurate Multiplexing and Filtering for High-Throughput Amplicon-Sequencing”. In: Nucleic Acids Research 43.5. cited By 127, pp. 2513-2524. DOI: 10.1093/nar/gkv107.

Geisen, S., I. Laros, A. Vizcaíno, et al. (2015). “Not All Are Free-Living: High-Throughput DNA Metabarcoding Reveals a Diverse Community of Protists Parasitizing Soil Metazoa”. In: Molecular Ecology 24.17. cited By 70, pp. 4556-4569. DOI: 10.1111/mec.13238.

Genitsaris, S., S. Monchy, E. Viscogliosi, et al. (2015). “Seasonal Variations of Marine Protist Community Structure Based on Taxon-Specific Traits Using the Eastern English Channel as a Model Coastal System”. In: FEMS Microbiology Ecology 91.5. cited By 26. DOI: 10.1093/femsec/fiv034.

Goltsman, D., L. Comolli, B. Thomas, et al. (2015). “Community Transcriptomics Reveals Unexpected High Microbial Diversity in Acidophilic Biofilm Communities”. In: ISME Journal 9. cited By 41, pp. 1014-1023. DOI: 10.1038/ismej.2014.200.

Gong, J., F. Shi, B. Ma, et al. (2015). “Depth Shapes α- and β-Diversities of Microbial Eukaryotes in Surficial Sediments of Coastal Ecosystems”. In: Environmental Microbiology 17.10. cited By 56, pp. 3722-3737. DOI: 10.1111/1462-2920.12763.

Guardiola, M., M. Uriz, P. Taberlet, et al. (2015). “Deep-Sea, Deep-Sequencing: Metabarcoding Extracellular DNA from Sediments of Marine Canyons”. In: PLoS ONE 10.10. cited By 76. DOI: 10.1371/journal.pone.0139633.

Jeffries, T., M. Ostrowski, R. Williams, et al. (2015). “Spatially Extensive Microbial Biogeography of the Indian Ocean Provides Insights into the Unique Community Structure of a Pristine Coral Atoll”. In: Scientific Reports 5. cited By 15. DOI: 10.1038/srep15383.

Jing, H., E. Rocke, L. Kong, et al. (2015). “Protist Communities in a Marine Oxygen Minimum Zone off Costa Rica by 454 Pyrosequencing”. In: Biogeosciences Discussions 12.16. cited By 7, pp. 13483-13509. DOI: 10.5194/bgd-12-13483-2015.

Lejzerowicz, F., P. Esling, L. Pillet, et al. (2015). “High-Throughput Sequencing and Morphology Perform Equally Well for Benthic Monitoring of Marine Ecosystems”. In: Scientific Reports 5. cited By 105. DOI: 10.1038/srep13932.

Lima-Mendez, G., K. Faust, N. Henry, et al. (2015). “Determinants of Community Structure in the Global Plankton Interactome”. In: Science 348.6237. cited By 343. DOI: 10.1126/science.1262073.

Mahé, F., J. Mayor, J. Bunge, et al. (2015). “Comparing High-Throughput Platforms for Sequencing the V4 Region of SSU-rDNA in Environmental Microbial Eukaryotic Diversity Surveys”. In: Journal of Eukaryotic Microbiology 62.3. cited By 40, pp. 338-345. DOI: 10.1111/jeu.12187.

Mahé, F., T. Rognes, C. Quince, et al. (2015). “Swarmv2: Highly-Scalable and High-Resolution Amplicon Clustering”. In: PeerJ 2015.12. cited By 201. DOI: 10.7717/peerj.1420.

Massana, R. (2015). Protistan Diversity in Environmental Molecular Surveys. cited By 8 , pp. 3-21. DOI: 10.1007/978-4-431-55130-0_1.

Massana, R., A. Gobet, S. Audic, et al. (2015). “Marine Protist Diversity in European Coastal Waters and Sediments as Revealed by High-Throughput Sequencing”. In: Environmental Microbiology 17.10. cited By 199, pp. 4035-4049. DOI: 10.1111/1462-2920.12955.

Morard, R., K. Darling, F. Mahé, et al. (2015). “PFR2: A Curated Database of Planktonic Foraminifera 18S Ribosomal DNA as a Resource for Studies of Plankton Ecology, Biogeography and Evolution”. In: Molecular Ecology Resources 15.6. cited By 28, pp. 1472-1485. DOI: 10.1111/1755-0998.12410.

Pánek, T., P. Táborskỳ, M. Pachiadaki, et al. (2015). “Combined Culture-Based and Culture-Independent Approaches Provide Insights into Diversity of Jakobids, an Extremely Plesiomorphic Eukaryotic Lineage”. In: Frontiers in Microbiology 6 (NOV). cited By 12. DOI: 10.3389/fmicb.2015.01288.

Pochon, X., A. Zaiko, G. Hopkins, et al. (2015). “Early Detection of Eukaryotic Communities from Marine Biofilm Using High-Throughput Sequencing: An Assessment of Different Sampling Devices”. In: Biofouling 31.3. cited By 35, pp. 241-251. DOI: 10.1080/08927014.2015.1028923.

Pringault, O., J. Aube, O. Bouchez, et al. (2015). “Contrasted Effects of Natural Complex Mixtures of PAHs and Metals on Oxygen Cycle in a Microbial Mat”. In: Chemosphere 135. cited By 5, pp. 189-201. DOI: 10.1016/j.chemosphere.2015.04.037.

Richards, T., G. Leonard, F. Mahé, et al. (2015). “Molecular Diversity and Distribution of Marine Fungi across 130 European Environmental Samples”. In: Proceedings of the Royal Society B: Biological Sciences 282.1819. cited By 89. DOI: 10.1098/rspb.2015.2243.

Rodríguez-Marconi, S., R. De La Iglesia, B. Díez, et al. (2015). “Characterization of Bacterial, Archaeal and Eukaryote Symbionts from Antarctic Sponges Reveals a High Diversity at a Three-Domain Level and a Particular Signature for This Ecosystem”. In: PLoS ONE 10.9. cited By 34. DOI: 10.1371/journal.pone.0138837.

Saghaï, A., Y. Zivanovic, N. Zeyen, et al. (2015). “Metagenome-Based Diversity Analyses Suggest a Significant Contribution of Non-Cyanobacterial Lineages to Carbonate Precipitation in Modern Microbialites”. In: Frontiers in Microbiology 6 (AUG). cited By 33. DOI: 10.3389/fmicb.2015.00797.

Simon, M., P. López-García, P. Deschamps, et al. (2015). “Marked Seasonality and High Spatial Variability of Protist Communities in Shallow Freshwater Systems”. In: ISME Journal 9.9. cited By 66, pp. 1941-1953. DOI: 10.1038/ismej.2015.6.

Wu, W., L. Wang, Y. Liao, et al. (2015). “Microbial Eukaryotic Diversity and Distribution in a River Plume and Cyclonic Eddy-Influenced Ecosystem in the South China Sea”. In: MicrobiologyOpen 4.5. cited By 5, pp. 826-840. DOI: 10.1002/mbo3.282.

2014

Chambouvet, A., C. Berney, S. Romac, et al. (2014). “Diverse Molecular Signatures for Ribosomally ‘active’ Perkinsea in Marine Sediments”. In: BMC Microbiology 14.1. cited By 23. DOI: 10.1186/1471-2180-14-110.

Christaki, U., K. Kormas, S. Genitsaris, et al. (2014). “Winter-Summer Succession of Unicellular Eukaryotes in a Meso-Eutrophic Coastal System”. In: Microbial Ecology 67.1. cited By 26, pp. 13-23. DOI: 10.1007/s00248-013-0290-4.

Decelle, J., S. Romac, E. Sasaki, et al. (2014). “Intracellular Diversity of the V4 and V9 Regions of the 18S rRNA in Marine Protists (Radiolarians) Assessed by High-Throughput Sequencing”. In: PLoS ONE 9.8. cited By 41. DOI: 10.1371/journal.pone.0104297.

Georges, C., S. Monchy, S. Genitsaris, et al. (2014). “Protist Community Composition during Early Phytoplankton Blooms in the Naturally Iron-Fertilized Kerguelen Area (Southern Ocean)”. In: Biogeosciences 11.20. cited By 17, pp. 5847-5863. DOI: 10.5194/bg-11-5847-2014.

Heger, T., V. Edgcomb, E. Kim, et al. (2014). “A Resurgence in Field Research Is Essential to Better Understand the Diversity, Ecology, and Evolution of Microbial Eukaryotes”. In: Journal of Eukaryotic Microbiology 61.2. cited By 20, pp. 214-223. DOI: 10.1111/jeu.12095.

Lara, E., C. Seppey, G. Garraza, et al. (2014). “Planktonic Eukaryote Molecular Diversity: Discrimination of Minerotrophic and Ombrotrophic Peatland Pools in Tierra Del Fuego (Argentina)”. In: Journal of Plankton Research 37.3. cited By 12, pp. 645-655. DOI: 10.1093/plankt/fbv016.

Lejzerowicz, F., P. Esling, and J. Pawlowski (2014). “Patchiness of Deep-Sea Benthic Foraminifera across the Southern Ocean: Insights from High-Throughput DNA Sequencing”. In: Deep-Sea Research Part II: Topical Studies in Oceanography 108. cited By 29, pp. 17-26. DOI: 10.1016/j.dsr2.2014.07.018.

Lentendu, G., T. Wubet, A. Chatzinotas, et al. (2014). “Effects of Long-Term Differential Fertilization on Eukaryotic Microbial Communities in an Arable Soil: A Multiple Barcoding Approach”. In: Molecular Ecology 23.13. cited By 92, pp. 3341-3355. DOI: 10.1111/mec.12819.

Lie, A., Z. Liu, S. Hu, et al. (2014). “Investigating Microbial Eukaryotic Diversity from a Global Census: Insights from a Comparison of Pyrotag and Full-Length Sequences of 18S rRNA Genes”. In: Applied and Environmental Microbiology 80.14. cited By 47, pp. 4363-4373. DOI: 10.1128/AEM.00057-14.

Logares, R., S. Audic, D. Bass, et al. (2014). “Patterns of Rare and Abundant Marine Microbial Eukaryotes”. In: Current Biology 24.8. cited By 238, pp. 813-821. DOI: 10.1016/j.cub.2014.02.050.

Massana, R., J. Del Campo, M. Sieracki, et al. (2014). “Exploring the Uncultured Microeukaryote Majority in the Oceans: Reevaluation of Ribogroups within Stramenopiles”. In: ISME Journal 8.4. cited By 102, pp. 854-866. DOI: 10.1038/ismej.2013.204.

Nanjappa, D., S. Audic, S. Romac, et al. (2014). “Assessment of Species Diversity and Distribution of an Ancient Diatom Lineage Using a DNA Metabarcoding Approach”. In: PLoS ONE 9.8. cited By 28. DOI: 10.1371/journal.pone.0103810.

Parfrey, L., W. Walters, C. Lauber, et al. (2014). “Communities of Microbial Eukaryotes in the Mammalian Gut within the Context of Environmental Eukaryotic Diversity”. In: Frontiers in Microbiology 5 (JUN). cited By 79. DOI: 10.3389/fmicb.2014.00298.

Parris, D., S. Ganesh, V. Edgcomb, et al. (2014). “Microbial Eukaryote Diversity in the Marine Oxygen Minimum Zone off Northern Chile”. In: Frontiers in Microbiology 5 (OCT). cited By 19. DOI: 10.3389/fmicb.2014.00543.

Patterson, D. (2014). “Helping Protists to Find Their Place in a Big Data World”. In: Acta Protozoologica 53.1. cited By 7, pp. 115-128. DOI: 10.4467/16890027AP.14.011.1448.

Taylor, J. and M. Cunliffe (2014). “High-Throughput Sequencing Reveals Neustonic and Planktonic Microbial Eukaryote Diversity in Coastal Waters”. In: Journal of Phycology 50.5. cited By 17, pp. 960-965. DOI: 10.1111/jpy.12228.

Wu, W., B. Huang, Y. Liao, et al. (2014). “Picoeukaryotic Diversity and Distribution in the Subtropical-Tropical South China Sea”. In: FEMS Microbiology Ecology 89.3. cited By 34, pp. 563-579. DOI: 10.1111/1574-6941.12357.

Xiuhai, L. (2014). “An OpenFlow Switch Model Using Kepler GPU”. In: Journal of Software Engineering 8.4. cited By 0, pp. 304-313. DOI: 10.3923/jse.2014.304.313.

Xu, Y., T. Vick-Majors, R. Morgan-Kiss, et al. (2014). “Ciliate Diversity, Community Structure, and Novel Taxa in Lakes of the McMurdo Dry Valleys, Antarctica”. In: Biological Bulletin 227.2. cited By 8, pp. 175-190. DOI: 10.1086/BBLv227n2p175.

Yilmaz, P., L. Parfrey, P. Yarza, et al. (2014). “The SILVA and”All-Species Living Tree Project (LTP)" Taxonomic Frameworks". In: Nucleic Acids Research 42.D1. cited By 803, pp. D643-D648. DOI: 10.1093/nar/gkt1209.

2013

Adl, S., A. Habura, and Y. Eglit (2013). “Amplification Primers of SSU rDNA for Soil Protists”. In: Soil Biology and Biochemistry 69. cited By 33, pp. 328-342. DOI: 10.1016/j.soilbio.2013.10.024.

Campo, J. del, V. Balagué, I. Forn, et al. (2013). “Culturing Bias in Marine Heterotrophic Flagellates Analyzed through Seawater Enrichment Incubations”. In: Microbial Ecology 66.3. cited By 18, pp. 489-499. DOI: 10.1007/s00248-013-0251-y.

Cheung, M., W. Nong, H. Kwan, et al. (2013). “Composition of Heterotrophic Flagellates in Coastal Waters of Different Trophic Status”. In: Current Microbiology 67.3. cited By 3, pp. 351-355. DOI: 10.1007/s00284-013-0374-x.

Decelle, J., P. Martin, K. Paborstava, et al. (2013). “Diversity, Ecology and Biogeochemistry of Cyst-Forming Acantharia (Radiolaria) in the Oceans”. In: PLoS ONE 8.1. cited By 35. DOI: 10.1371/journal.pone.0053598.

Del Campo, J. and I. Ruiz-Trillo (2013). “Environmental Survey Meta-Analysis Reveals Hidden Diversity among Unicellular Opisthokonts”. In: Molecular Biology and Evolution 30.4. cited By 31, pp. 802-805. DOI: 10.1093/molbev/mst006.

Egge, E., L. Bittner, T. Andersen, et al. (2013). “454 Pyrosequencing to Describe Microbial Eukaryotic Community Composition, Diversity and Relative Abundance: A Test for Marine Haptophytes”. In: PLoS ONE 8.9. cited By 83. DOI: 10.1371/journal.pone.0074371.

Fernández-Suárez, X. and M. Galperin (2013). “The 2013 Nucleic Acids Research Database Issue and the Online Molecular Biology Database Collection”. In: Nucleic Acids Research 41.D1. cited By 58, pp. D1-D7. DOI: 10.1093/nar/gks1297.

Risse-Buhl, U., M. Herrmann, P. Lange, et al. (2013). “Phagotrophic Protist Diversity in the Groundwater of a Karstified Aquifer - Morphological and Molecular Analysis”. In: Journal of Eukaryotic Microbiology 60.5. cited By 13, pp. 467-479. DOI: 10.1111/jeu.12054.

Thaler, M. and C. Lovejoy (2013). “Environmental Selection of Marine Stramenopile Clades in the Arctic Ocean and Coastal Waters”. In: Polar Biology 37.3. cited By 7, pp. 347-357. DOI: 10.1007/s00300-013-1435-0.

Vinogradov, S., X. Bailly, D. Smith, et al. (2013). “Microbial Eukaryote Globins”. In: Advances in Microbial Physiology 63. cited By 29, pp. 391-446. DOI: 10.1016/B978-0-12-407693-8.00009-1.

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Daniel Vaulot
NTU, Singapore

Focusing on marine (pico)phytoplankton .