Papers citing PR2

Number of citations per year.

Total number of papers citing PR2: 324 (November 2019)


  1. Kolody BC., McCrow JP., Allen LZ., Aylward FO., Fontanez KM., Moustafa A., Moniruzzaman M., Chavez FP., Scholin CA., Allen EE., Worden AZ., Delong EF., Allen AE. 2019. Diel transcriptional response of a California Current plankton microbiome to light, low iron, and enduring viral infection. The ISME Journal. DOI: 10.1038/s41396-019-0472-2.
  2. Wu W., Huang B. 2019. Protist diversity and community assembly in surface sediments of the South China Sea. MicrobiologyOpen:e891. DOI: 10.1002/mbo3.891.
  3. Cleary DFR., Gomes NCM. 2019. Baseline information on prokaryotic and microeukaryotic plankton communities inside and outside of Indonesian marine lakes. Journal of Sea Research 148–149:23–32. DOI: 10.1016/j.seares.2019.04.001.
  4. Marquardt M., Skogseth R., Wiedmann I., Vader A., Reigstad M., Cottier F., Gabrielsen T. 2019. Vertical export of marine pelagic protists in an ice-free high-Arctic fjord (Adventfjorden, West Spitsbergen) throughout 2011-2012. Aquatic Microbial Ecology 83:65–82. DOI: 10.3354/ame01904.
  5. Kataoka T., Kondo R. 2019. Protistan community composition in anoxic sediments from three salinity-disparate Japanese lakes. Estuarine, Coastal and Shelf Science 224:34–42. DOI: 10.1016/j.ecss.2019.04.046.
  6. Gómez-Consarnau L., Needham DM., Weber PK., Fuhrman JA., Mayali X. 2019. Influence of Light on Particulate Organic Matter Utilization by Attached and Free-Living Marine Bacteria. Frontiers in Microbiology 10:1–11. DOI: 10.3389/fmicb.2019.01204.
  7. Cleary DFR. 2019. A comparison of microeukaryote communities inhabiting sponges and seawater in a Taiwanese coral reef system. Annals of Microbiology. DOI: 10.1007/s13213-019-01476-5.
  8. Boeuf D., Edwards BR., Eppley JM., Hu SK., Poff KE., Romano AE., Caron DA., Karl DM., DeLong EF. 2019. Biological composition and microbial dynamics of sinking particulate organic matter at abyssal depths in the oligotrophic open ocean. Proceedings of the National Academy of Sciences:201903080. DOI: 10.1073/pnas.1903080116.
  9. Wilschut RA., Geisen S., Martens H., Kostenko O., Hollander M., Hooven FC., Weser C., Snoek LB., Bloem J., Caković D., Čelik T., Koorem K., Krigas N., Manrubia M., Ramirez KS., Tsiafouli MA., Vreš B., Putten WH. 2019. Latitudinal variation in soil nematode communities under climate warming‐related range‐expanding and native plants. Global Change Biology:gcb.14657. DOI: 10.1111/gcb.14657.
  10. Ribeiro H., Martins A., Gonçalves M., Guedes M., Tomasino MP., Dias N., Dias A., Mucha AP., Carvalho MF., Almeida CMR., Ramos S., Almeida JM., Silva E., Magalhães C. 2019. Development of an autonomous biosampler to capture in situ aquatic microbiomes. PLOS ONE 14:e0216882. DOI: 10.1371/journal.pone.0216882.
  11. Liu L., Chen H., Liu M., Yang JR., Xiao P., Wilkinson DM., Yang J. 2019. Response of the eukaryotic plankton community to the cyanobacterial biomass cycle over 6 years in two subtropical reservoirs. The ISME Journal. DOI: 10.1038/s41396-019-0417-9.
  12. Giner CR., Balagué V., Krabberød AK., Ferrera I., Reñé A., Garcés E., Gasol JM., Logares R., Massana R. 2019. Quantifying long‐term recurrence in planktonic microbial eukaryotes. Molecular Ecology 28:923–935. DOI: 10.1111/mec.14929.
  13. Lentendu G., Mahé F., Bass D., Rueckert S., Stoeck T., Dunthorn M. 2018. Consistent patterns of high alpha and low beta diversity in tropical parasitic and free-living protists. Molecular Ecology 27:2846–2857. DOI: 10.1111/mec.14731.
  14. Enberg S., Majaneva M., Autio R., Blomster J., Rintala J. 2018. Phases of microalgal succession in sea ice and the water column in the Baltic Sea from autumn to spring. Marine Ecology Progress Series 599:19–34. DOI: 10.3354/meps12645.
  15. Giner CR., Balagué V., Pernice MC., Duarte CM. 2019. Marked changes in diversity and relative activity of picoeukaryotes with depth in the global ocean. bioRxiv. DOI: 10.1101552604.
  16. Metz S., Lopes dos Santos A., Berman MC., Bigeard E. 2019. Diversity of photosynthetic picoeukaryotes in eutrophic shallow lakes as assessed by combining flow cytometry cell-sorting and high throughput sequencing. bioRxiv. DOI: 10.1101551598.
  17. Pasulka A., Hu SK., Countway PD., Coyne KJ., Cary SC., Heidelberg KB., Caron DA. 2019. SSUrRNA Gene Sequencing Survey of Benthic Microbial Eukaryotes from Guaymas Basin Hydrothermal Vent. Journal of Eukaryotic Microbiology:jeu.12711. DOI: 10.1111/jeu.12711.
  18. Ramond P., Sourisseau M., Simon N., Romac S., Schmitt S., Rigaut-Jalabert F., Henry N., de Vargas C., Siano R. 2019. Coupling between taxonomic and functional diversity in protistan coastal communities. Environmental Microbiology. DOI: 10.11111462-2920.14537.
  19. Venter PC., Nitsche F., Arndt H. 2018. The Hidden Diversity of Flagellated Protists in Soil. Protist 169:432–449. DOI: 10.1016/j.protis.2018.04.007.
  20. Adl SM., Bass D., Lane CE., Lukeš J., Schoch CL., Smirnov A., Agatha S., Berney C., Brown MW., Burki F., Cárdenas P., Čepička I., Chistyakova L., del Campo J., Dunthorn M., Edvardsen B., Eglit Y., Guillou L., Hampl V., Heiss AA., Hoppenrath M., James TY., Karpov S., Kim E., Kolisko M., Kudryavtsev A., Lahr DJG., Lara E., Le Gall L., Lynn DH., Mann DG., Massana i Molera R., Mitchell EAD., Morrow C., Park JS., Pawlowski JW., Powell MJ., Richter DJ., Rueckert S., Shadwick L., Shimano S., Spiegel FW., Torruella i Cortes G., Youssef N., Zlatogursky V., Zhang Q. 2019. Revisions to the Classification, Nomenclature, and Diversity of Eukaryotes. Journal of Eukaryotic Microbiology 66:4–119. DOI: 10.1111/jeu.12691.
  21. Moore LR., Huang T., Ostrowski M., Mazard S. 2019. Unicellular Cyanobacteria Are Important Components of Phytoplankton Communities in Australia ’ s Northern Oceanic Ecoregions. Frontiers in Microbiology 9:1–16. DOI: 10.3389/fmicb.2018.03356.
  22. de Sousa AGG., Tomasino MP., Duarte P., Fernández-Méndez M., Assmy P., Ribeiro H., Surkont J., Leite RB., Pereira-Leal JB., Torgo L., Magalhães C. 2019. Diversity and Composition of Pelagic Prokaryotic and Protist Communities in a Thin Arctic Sea-Ice Regime. Microbial Ecology. DOI: 10.1007/s00248-018-01314-2.
  23. Faure E., Not F., Benoiston A-S., Labadie K., Bittner L., Ayata S-D. 2019. Mixotrophic protists display contrasted biogeographies in the global ocean. The ISME Journal. DOI: 10.1038/s41396-018-0340-5.
  24. Gaonkar CC., Piredda R., Minucci C., Mann DG., Montresor M., Sarno D., Kooistra WHCF. 2018. Annotated 18S and 28S rDNA reference sequences of taxa in the planktonic diatom family Chaetocerotaceae. PLOS ONE 13:e0208929. DOI: 10.1371/journal.pone.0208929.
  25. Varkey D., Mazard S., Jeffries TC., Hughes DJ., Seymour J., Paulsen IT., Ostrowski M. 2018. Stormwater influences phytoplankton assemblages within the diverse, but impacted Sydney Harbour estuary. Plos One 13:e0209857. DOI: 10.1371/journal.pone.0209857.
  26. Angelakis E., Bachar D., Yasir M., Musso D., Djossou F., Gaborit B., Brah S., Diallo A., Ndombe GM., Mediannikov O., Robert C., Azhar EI., Bibi F., Nsana NS., Parra H-J., Akiana J., Sokhna C., Davoust B., Dutour A., Raoult D. 2019. Treponema species enrich the gut microbiota of traditional rural populations but are absent from urban individuals. New Microbes and New Infections 27:14–21. DOI: 10.1016/j.nmni.2018.10.009.


  1. Wangensteen, O.S., Cebrian, E., Palacin, C. & Turon, X. 2018. Under the canopy: Community-wide effects of invasive algae in Marine Protected Areas revealed by metabarcoding. Mar. Pollut. Bull. 127:54–66.
  2. von Ammon, U., Wood, S.A., Laroche, O., Zaiko, A., Tait, L., Lavery, S., Inglis, G. et al. 2018. The impact of artificial surfaces on marine bacterial and eukaryotic biofouling assemblages: A high-throughput sequencing analysis. Mar. Environ. Res. 133:57–66.
  3. Tragin, M., Zingone, A. & Vaulot, D. 2018. Comparison of coastal phytoplankton composition estimated from the V4 and V9 regions of 18S rRNA gene with a focus on photosynthetic groups and especially Chlorophyta. Environ. Microbiol. 20:1–41.
  4. Fiore-Donno, A.M., Rixen, C., Rippin, M., Glaser, K., Samolov, E., Karsten, U., Becker, B. et al. 2018. New barcoded primers for efficient retrieval of cercozoan sequences in high-throughput environmental diversity surveys, with emphasis on worldwide biological soil crusts. Mol. Ecol. Resour. 18:229–39.
  5. Flegontova, O., Flegontov, P., Malviya, S., Poulain, J., de Vargas, C., Bowler, C., Lukeš, J. et al. 2018. Neobodonids are dominant kinetoplastids in the global ocean. Environ. Microbiol. 20:878–89.
  6. Vader, A., Laughinghouse, H.D., Griffiths, C., Jakobsen, K.S. & Gabrielsen, T.M. 2018. Proton-pumping rhodopsins are abundantly expressed by microbial eukaryotes in a high-Arctic fjord. Environ. Microbiol. 20:890–902.
  7. Szelecz, I.I., Lösch, S., Seppey, C.V.W., Lara, E., Singer, D., Sorge, F., Tschui, J. et al. 2018. Comparative analysis of bones, mites, soil chemistry, nematodes and soil micro-eukaryotes from a suspected homicide to estimate the post-mortem interval. Sci. Rep. 8:25.
  8. Vader, A., Laughinghouse, H.D., Griffiths, C., Jakobsen, K.S. & Gabrielsen, T.M. 2018. Proton-pumping rhodopsins are abundantly expressed by microbial eukaryotes in a high-Arctic fjord. Environ. Microbiol. 20:890–902.
  9. Gołębiewski, M., Tarasek, A., Sikora, M., Deja-Sikora, E., Tretyn, A. & Niklińska, M. 2018. Rapid Microbial Community Changes During Initial Stages of Pine Litter Decomposition. Microb. Ecol.
  10. Kisand, V., Talas, L., Kisand, A., Stivrins, N., Reitalu, T., Alliksaar, T., Vassiljev, J. et al. 2018. From microbial eukaryotes to metazoan vertebrates: Wide spectrum paleo-diversity in sedimentary ancient DNA over the last ~14,500 years. Geobiology. 1–12.
  11. Oliverio, A.M., Power, J.F., Washburne, A., Cary, S.C., Stott, M.B. & Fierer, N. 2018. The ecology and diversity of microbial eukaryotes in geothermal springs. ISME J. 1.
  12. Bahram, M., Hildebrand, F., Forslund, S.K., Anderson, J.L., Soudzilovskaia, N.A., Bodegom, P.M., Bengtsson-Palme, J. et al. 2018. Structure and function of the global topsoil microbiome. Nature.
  13. Fiore-Donno, A.M., Rixen, C., Rippin, M., Glaser, K., Samolov, E., Karsten, U., Becker, B. et al. 2018. New barcoded primers for efficient retrieval of cercozoan sequences in high-throughput environmental diversity surveys, with emphasis on worldwide biological soil crusts. Mol. Ecol. Resour. 18:229–39.
  14. Needham, D.M., Fichot, E.B., Wang, E., Berdjeb, L., Cram, J.A., Fichot, C.G. & Fuhrman, J.A. 2018. Dynamics and interactions of highly resolved marine plankton via automated high frequency sampling. bioRxiv.
  15. Hunsucker, K.Z., Vora, G.J., Hunsucker, J.T., Gardner, H., Leary, D.H., Kim, S., Lin, B. et al. 2018. Biofilm community structure and the associated drag penalties of a groomed fouling release ship hull coating. Biofouling. 34:162–72.
  16. Stern, R., Kraberg, A., Bresnan, E., Kooistra, W.H.C.F., Lovejoy, C., Montresor, M., Morán, X.A.G. et al. 2018. Molecular analyses of protists in long-term observation programmes—current status and future perspectives. J. Plankton Res. in press.
  17. Mukherjee, I., Hodoki, Y. & Nakano, S. 2018. Seasonal dynamics of heterotrophic and plastidic protists in the water column of Lake Biwa, Japan. Aquat. Microb. Ecol. 80:123–37.
  18. Rachik, S., Christaki, U., Li, L.L., Genitsaris, S., Breton, E. & Monchy, S. 2018. Diversity and potential activity patterns of planktonic eukaryotic microbes in a mesoeutrophic coastal area (eastern English Channel). PLoS One. 13:e0196987.
  19. Leff, J.W., Bardgett, R.D., Wilkinson, A., Jackson, B.G., Pritchard, W.J., De Long, J.R., Oakley, S. et al. 2018. Predicting the structure of soil communities from plant community taxonomy, phylogeny, and traits. ISME J.
  20. Herve, V., Leroy, B., Pires, A.D.S., Lopez, P.J., Hervé, V., Leroy, B., Da Silva Pires, A. et al. 2018. Aquatic urban ecology at the scale of a capital: community structure and interactions in street gutters. ISME J. 12:253–66.
  21. López-Escardó, D., Paps, J., de Vargas, C., Massana, R., Ruiz-Trillo, I. & del Campo, J. 2018. Metabarcoding analysis on European coastal samples reveals new molecular metazoan diversity. Sci. Rep. 8:9106.
  22. Xie, Y., Floehr, T., Zhang, X., Xiao, H., Yang, J., Xia, P., Burton, G.A. et al. 2018. In situ microbiota distinguished primary anthropogenic stressor in freshwater sediments. Environ. Pollut. 239:189–97.
  23. Wylezich, C., Herlemann, D.P.R. & Juergens, K. 2018. Improved 18S rDNA amplification protocol for assessing protist diversity in oxygen-deficient marine systems. Aquat. Microb. Ecol. 81:83–94.
  24. Tan, S. & Liu, H. 2018. Unravel the hidden protistan diversity: application of blocking primers to suppress PCR amplification of metazoan DNA. Appl. Microbiol. Biotechnol. 102:389–401.
  25. Cai, J., Bai, C., Tang, X., Dai, J., Gong, Y., Hu, Y., Shao, K. et al. 2018. Characterization of bacterial and microbial eukaryotic communities associated with an ephemeral hypoxia event in Taihu Lake, a shallow eutrophic Chinese lake. Environ. Sci. Pollut. Res. 25:31543–57.
  26. del Campo, J., Kolisko, M., Boscaro, V., Santoferrara, L.F., Nenarokov, S., Massana, R., Guillou, L. et al. 2018. EukRef: Phylogenetic curation of ribosomal RNA to enhance understanding of eukaryotic diversity and distribution. PLOS Biol. 16:e2005849.
  27. Zouari, A.B., Hassen, M.B., Balague, V., Sahli, E., Ben Kacem, M.Y., Akrout, F., Hamza, A. et al. 2018. Picoeukaryotic diversity in the Gulf of Gabes: variability patterns and relationships to nutrients and water masses. Aquat. Microb. Ecol. 81:37–53.
  28. Forster, D., Filker, S., Kochems, R., Breiner, H.-W., Cordier, T., Pawlowski, J. & Stoeck, T. 2018. A Comparison of Different Ciliate Metabarcode Genes as Bioindicators for Environmental Impact Assessments of Salmon Aquaculture. J. Eukaryot. Microbiol. 1–15.
  29. Lewitus, E., Bittner, L., Malviya, S., Bowler, C. & Morlon, H. 2018. Clade-specific diversification dynamics of marine diatoms since the Jurassic. Nat. Ecol. Evol. 2:1715–23.
  30. Hernández-Ruiz, M., Barber-Lluch, E., Prieto, A., Álvarez-Salgado, X.A., Logares, R. & Teira, E. 2018. Seasonal succession of small planktonic eukaryotes inhabiting surface waters of a coastal upwelling system. Environ. Microbiol. in press.
  31. Boscaro, V., Syberg-Olsen, M.J., Irwin, N.A.T., del Campo, J. & Keeling, P.J. 2018. What Can Environmental Sequences Tell Us About the Distribution of Low-Rank Taxa? The Case of Euplotes (Ciliophora, Spirotrichea), Including a Description of Euplotes enigma sp. nov. J. Eukaryot. Microbiol. 0–3.
  32. Kamp, A., Petro, C., Røy, H., Nielsen, S., Carvalho, P., Stief, P. & Schramm, A. 2018. Intracellular nitrate in sediments of an oxygen-deficient marine basin is linked to pelagic diatoms. FEMS Microbiol. Ecol. 94:1–12.
  33. Ser-Giacomi, E., Zinger, L., Malviya, S., De Vargas, C., Karsenti, E., Bowler, C. & De Monte, S. 2018. Ubiquitous abundance distribution of non-dominant plankton across the global ocean. Nat. Ecol. Evol.
  34. Gebert, M.J., Delgado-Baquerizo, M., Oliverio, A.M., Webster, T.M., Nichols, L.M., Honda, J.R., Chan, E.D. et al. 2018. Ecological Analyses of Mycobacteria in Showerhead Biofilms and Their Relevance to Human Health. MBio. 9:366088.
  35. Guo, S., Xiong, W., Xu, H., Hang, X., Liu, H., Xun, W., Li, R. et al. 2018. Continuous application of different fertilizers induces distinct bulk and rhizosphere soil protist communities. Eur. J. Soil Biol. 88:8–14.
  36. Boast, A.P., Weyrich, L.S., Wood, J.R., Metcalf, J.L., Knight, R. & Cooper, A. 2018. Coprolites reveal ecological interactions lost with the extinction of New Zealand birds. Proc. Natl. Acad. Sci. U. S. A. 115:1546–51.
  37. Clerissi, C., Brunet, S., Vidal-Dupiol, J., Adjeroud, M., Lepage, P., Guillou, L., Escoubas, J.-M. et al. 2018. Protists Within Corals: The Hidden Diversity. Front. Microbiol. 9:2043.
  38. Arroyo, A.S., López-Escardó, D., Kim, E., Ruiz-Trillo, I. & Najle, S.R. 2018. Novel Diversity of Deeply Branching Holomycota and Unicellular Holozoans Revealed by Metabarcoding in Middle Paraná River, Argentina. Front. Ecol. Evol. 6:99.
  39. Wu, W., Lu, H.-P., Sastri, A., Yeh, Y.-C., Gong, G.-C., Chou, W.-C. & Hsieh, C.-H. 2018. Contrasting the relative importance of species sorting and dispersal limitation in shaping marine bacterial versus protist communities. ISME J. 12:485–94.
  40. Ammon, U. von, Wood, S.A., Laroche, O., Zaiko, A., Tait, L., Lavery, S., Inglis, G.J. et al. 2018. Combining morpho-taxonomy and metabarcoding enhances the detection of non-indigenous marine pests in biofouling communities. Sci. Rep. 8:16290.
  41. Laroche, O., Wood, S.A., Tremblay, L.A., Ellis, J.I., Lear, G. & Pochon, X. 2018. A cross-taxa study using environmental DNA/RNA metabarcoding to measure biological impacts of offshore oil and gas drilling and production operations. Mar. Pollut. Bull. 127:97–107.
  42. Boaventura, C.M., Coelho, F.J.R.C., Martins, P.T., Pires, A.C.C., Duarte, L.N., Uetanabaro, A.P.T., Cleary, D.F.R. et al. 2018. Micro-eukaryotic plankton diversity in an intensive aquaculture system for production of Scophthalmus maximus and Solea senegalensis. AQUACULTURE. 490:321–8.
  43. Piwosz, K., Całkiewicz, J., Gołębiewski, M. & Creer, S. 2018. Diversity and community composition of pico- and nanoplanktonic protists in the Vistula River estuary (Gulf of Gdańsk, Baltic Sea). Estuar. Coast. Shelf Sci. 207:242–9.
  44. Zhu, P., Wang, Y., Shi, T., Huang, G. & Gong, J. 2018. Genetic Diversity of Benthic Microbial Eukaryotes in Response to Spatial Heterogeneity of Sediment Geochemistry in a Mangrove Ecosystem. ESTUARIES AND COASTS. 41:751–64.
  45. Leblanc, K., Queguiner, B., Diaz, F., Cornet, V., Michel-Rodriguez, M., de Madron, X.D., Bowler, C. et al. 2018. Nanoplanktonic diatoms are globally overlooked but play a role in spring blooms and carbon export. Nat. Commun. 9.
  46. van der Reis, A.L. 2018. Preliminary analysis of New Zealand scampi ( Metanephrops challengeri ) diet using metabarcoding. PeerJ Prepr.
  47. Morard, R., Garet-Delmas, M.-J., Mahe, F., Romac, S., Poulain, J., Kucera, M. & de Vargas, C. 2018. Surface ocean metabarcoding confirms limited diversity in planktonic foraminifera but reveals unknown hyper-abundant lineages. Sci. Rep. 8.
  48. Berdjeb, L., Parada, A., Needham, D.M. & Fuhrman, J.A. 2018. Short-term dynamics and interactions of marine protist communities during the spring–summer transition. ISME J.


  1. Fletcher, L.M., Zaiko, A., Atalah, J., Richter, I., Dufour, C.M., Pochon, X., Wood, S.A. et al. 2017. Bilge water as a vector for the spread of marine pests: a morphological, metabarcoding and experimental assessment. Biol. Invasions. 19:2851–67.
  2. Balzano, S. & Leterme, S.C. 2017. Persistent and top ranked microbial taxa can dominate marine microbial communities. Microb. Ecol.
  3. Salvitti, L., Wood, S.A., Fairweather, R., Culliford, D., McNabb, P. & Cary, S.C. 2017. In situ accumulation of tetrodotoxin in non-toxic Pleurobranchaea maculata (Opisthobranchia). Aquat. Sci. 79:335–44.
  4. Smith, K.F., Kohli, G.S., Murray, S.A. & Rhodes, L.L. 2017. Assessment of the metabarcoding approach for community analysis of benthic-epiphytic dinoflagellates using mock communities. NEW Zeal. J. Mar. Freshw. Res. 51:555–76.
  5. Filker, S., Forster, D., Weinisch, L., Mora-Ruiz, M., Gonzalez, B., Eugenia Farias, M., Rossello-Mora, R. et al. 2017. Transition boundaries for protistan species turnover in hypersaline waters of different biogeographic regions. Environ. Microbiol. 19:3186–200.
  6. Leray, M. & Knowlton, N. 2017. Random sampling causes the low reproducibility of rare eukaryotic OTUs in Illumina COI metabarcoding. PeerJ. 5.
  7. Torruella, G., Moreira, D. & López-García, P. 2017. Phylogenetic and ecological diversity of apusomonads, a lineage of deep-branching eukaryotes. Environ. Microbiol. Rep. 00:1–7.
  8. Machida, R.J., Leray, M., Ho, S.-L. & Knowlton, N. 2017. Data Descriptor: Metazoan mitochondrial gene sequence reference datasets for taxonomic assignment of environmental samples. Sci. DATA. 4.
  9. dos Santos, A.L., Gourvil, P., Tragin, M., Noel, M.-H., Decelle, J., Romac, S., Vaulot, D. et al. 2017. Diversity and oceanic distribution of prasinophytes clade VII, the dominant group of green algae in oceanic waters. ISME J. 11:512–28.
  10. Simon, N., Foulon, E., Grulois, D., Six, C., Desdevises, Y., Latimier, M., Le Gall, F. et al. 2017. Revision of the Genus Micromonas Manton et Parke (Chlorophyta, Mamiellophyceae), of the Type Species M. pusilla (Butcher) Manton & Parke and of the Species M. commoda van Baren, Bachy and Worden and Description of Two New Species Based on the Genetic. Protist. 168:612–35.
  11. Biard, T., Bigeard, E., Audic, S.S., Poulain, J., Gutierrez-Rodriguez, A., Pesant, S.S., Stemmann, L. et al. 2017. Biogeography and diversity of Collodaria (Radiolaria) in the global ocean. ISME J. 11:1331–44.
  12. Piredda, R., Sarno, D., Lange, C.B., Tomasino, M.P., Zingone, A. & Montresor, M. 2017. Diatom resting stages in surface sediments: a pilot study comparing Next Generation Sequencing and Serial Dilution Cultures. Cryptogam. Algol. 38:31–46.
  13. Wu, W., Logares, R., Huang, B. & Hsieh, C. 2017. Abundant and rare picoeukaryotic sub-communities present contrasting patterns in the epipelagic waters of marginal seas in the northwestern Pacific Ocean. Environ. Microbiol. 19:287–300.
  14. Lee, K.H., Ab Samad, L.S., Lwin, P.M., Riedel, S.F., Magin, A., Bashir, M., Vaishampayan, P.A. et al. 2017. On the Rocks: Microbiological Quality and Microbial Diversity of Packaged Ice in Southern California. J. Food Prot. 80:1041–9.
  15. Mahe, F., de Vargas, C., Bass, D., Czech, L., Stamatakis, A., Lara, E., Singer, D. et al. 2017. Parasites dominate hyperdiverse soil protist communities in Neotropical rainforests. Nat. Ecol. Evol. 1:0091.
  16. Domaizon, I., Winegardner, A., Capo, E., Gauthier, J. & Gregory-Eaves, I. 2017. DNA-based methods in paleolimnology: new opportunities for investigating long-term dynamics of lacustrine biodiversity. J. Paleolimnol. 58:1–21.
  17. Huang, T. 2017. Spatial heterogeneity defines microbial eukaryotic communities in a subtropical hotspot of production and nitrogen fixation. Environ. Microbiol.
  18. Lohan, K.M.P., Fleischer, R.C., Carney, K.J., Holzer, K.K. & Ruiz, G.M. 2017. Molecular characterisation of protistan species and communities in ships’ ballast water across three US coasts. Divers. Distrib. 23:680–91.
  19. Penna, A., Casabianca, S., Guerra, A.F., Vernesi, C. & Scardi, M. 2017. Analysis of phytoplankton assemblage structure in the Mediterranean Sea based on high-throughput sequencing of partial 18S rRNA sequences. Mar. Genomics. 36:49–55.
  20. Torruella, G., Moreira, D. & Lopez-Garcia, P. 2017. Phylogenetic and ecological diversity of apusomonads, a lineage of deep-branching eukaryotes. Environ. Microbiol. Rep. 9:113–9.
  21. Hugerth, L.W. & Andersson, A.F. 2017. Analysing Microbial Community Composition through Amplicon Sequencing: From Sampling to Hypothesis Testing. Front. Microbiol. 8.
  22. Saghai, A., Gutierrez-Preciado, A., Deschamps, P., Moreira, D., Bertolino, P., Ragon, M. & Lopez-Garcia, P. 2017. Unveiling microbial interactions in stratified mat communities from a warm saline shallow pond. Environ. Microbiol. 19:2405–21.
  23. Deiner, K., Bik, H.M., Machler, E., Seymour, M., Lacoursiere-Roussel, A., Altermatt, F., Creer, S. et al. 2017. Environmental DNA metabarcoding: Transforming how we survey animal and plant communities. Mol. Ecol. 26:5872–95.
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Daniel Vaulot
NTU, Singapore

Focusing on marine (pico)phytoplankton .